Variant report

Variant	rs6802178
Chromosome Location	chr3:97916788-97916789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs1024053	0.80[ASN][1000 genomes]
rs1024056	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11706357	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11706390	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11710803	0.80[ASN][1000 genomes]
rs11715052	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11715218	0.80[ASN][1000 genomes]
rs11715921	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11718318	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11719161	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11720006	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11720576	0.80[ASN][1000 genomes]
rs11914600	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11923541	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12330386	0.81[ASN][1000 genomes]
rs12489167	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12489398	0.81[ASN][1000 genomes]
rs12490755	0.81[ASN][1000 genomes]
rs12498051	0.81[ASN][1000 genomes]
rs12695683	0.81[ASN][1000 genomes]
rs12695684	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13059290	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13060569	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13060763	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13061180	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13061364	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13080640	0.81[ASN][1000 genomes]
rs13081420	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13084823	0.81[ASN][1000 genomes]
rs13084986	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13088168	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13099950	0.81[ASN][1000 genomes]
rs13433842	0.81[ASN][1000 genomes]
rs13433847	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1391151	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1532463	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1532464	0.82[ASN][1000 genomes]
rs1532465	0.80[AMR][1000 genomes]
rs1548142	0.80[ASN][1000 genomes]
rs1587280	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16839400	0.80[ASN][1000 genomes]
rs16839434	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16839438	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16839446	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1846078	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1908997	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1908998	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1908999	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2047389	0.80[ASN][1000 genomes]
rs2047390	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2047391	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2047392	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2047393	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2088408	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2291810	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2316299	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2316300	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28481861	0.80[ASN][1000 genomes]
rs28484994	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28678410	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2873119	0.80[ASN][1000 genomes]
rs2873120	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2873121	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34051821	0.80[ASN][1000 genomes]
rs34111209	0.80[ASN][1000 genomes]
rs34250420	0.80[ASN][1000 genomes]
rs34448974	0.81[ASN][1000 genomes]
rs34573833	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34689326	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34826958	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34859603	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34918234	0.80[ASN][1000 genomes]
rs34931487	0.81[ASN][1000 genomes]
rs35025561	0.80[ASN][1000 genomes]
rs35122376	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35200215	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35221063	0.81[ASN][1000 genomes]
rs35327048	0.80[ASN][1000 genomes]
rs35734642	0.82[ASN][1000 genomes]
rs35814153	0.81[ASN][1000 genomes]
rs35838671	0.82[ASN][1000 genomes]
rs35907125	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4264769	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4286458	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4365665	0.80[ASN][1000 genomes]
rs4405956	0.82[AMR][1000 genomes]
rs4452365	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4463010	0.80[AMR][1000 genomes]
rs4463011	0.80[AMR][1000 genomes]
rs4464499	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4482695	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4546179	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4621367	0.80[ASN][1000 genomes]
rs4624601	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857344	0.80[ASN][1000 genomes]
rs4857345	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857346	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857347	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857348	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857349	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857350	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4857351	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5000372	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5000376	0.80[ASN][1000 genomes]
rs5000377	0.80[ASN][1000 genomes]
rs55802233	0.81[AMR][1000 genomes]
rs56001215	0.81[AMR][1000 genomes]
rs56206401	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58188940	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59598356	0.81[AMR][1000 genomes]
rs62267190	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62267191	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62267192	0.80[ASN][1000 genomes]
rs62267801	0.81[AMR][1000 genomes]
rs62267804	0.86[AMR][1000 genomes]
rs62267806	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62267815	0.81[AMR][1000 genomes]
rs6414338	0.80[ASN][1000 genomes]
rs6439682	0.80[ASN][1000 genomes]
rs6439684	0.80[ASN][1000 genomes]
rs67191025	0.81[AMR][1000 genomes]
rs6765411	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6765598	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6765605	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6765940	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6766035	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6766605	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6766681	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6768197	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6769416	0.84[AMR][1000 genomes]
rs6770869	0.80[ASN][1000 genomes]
rs6771099	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6776813	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6791813	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6794694	0.84[AMR][1000 genomes]
rs6806465	0.85[AMR][1000 genomes]
rs6806695	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs68091373	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6809326	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6809422	0.84[AMR][1000 genomes]
rs6809633	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs68151968	0.81[AMR][1000 genomes]
rs72927022	0.81[AMR][1000 genomes]
rs72927032	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72927035	0.84[AMR][1000 genomes]
rs73135361	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7426834	0.80[AMR][1000 genomes]
rs7430016	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7634043	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7634063	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7634274	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7634735	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7640900	0.81[ASN][1000 genomes]
rs7645384	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7645400	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7647986	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9824733	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9840421	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9848264	0.80[ASN][1000 genomes]
rs9853761	0.80[ASN][1000 genomes]
rs9879316	0.81[ASN][1000 genomes]
rs995557	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv2566065	chr3:97873442-97931531	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv5601	chr3:97874279-97931369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3428925	chr3:97874391-97931104	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3326206	chr3:97874447-97931276	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv513059	chr3:97875075-97932953	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv3430659	chr3:97878961-97933659	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv3504753	chr3:97881256-97920688	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
15	esv3504754	chr3:97881256-97920688	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
16	esv3520819	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
17	esv3520820	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	esv1792159	chr3:97887491-97919363	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
19	esv1810766	chr3:97887491-97919363	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
20	esv1823394	chr3:97887491-97919363	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
21	esv1824074	chr3:97887491-97919363	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
22	esv1836052	chr3:97887491-97919363	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
23	esv1836766	chr3:97887491-97919363	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
24	esv1850194	chr3:97887491-97919363	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
25	esv1850328	chr3:97887491-97919363	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
26	nsv442868	chr3:97887491-97919363	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
27	esv2762341	chr3:97899320-97926120	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
28	esv13127	chr3:97899419-97939393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv870074	chr3:97903273-97948850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
30	esv2763288	chr3:97908670-97947253	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
31	esv13073	chr3:97908878-97924741	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	n/a
32	esv2428250	chr3:97908945-97916951	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	n/a
33	esv3418224	chr3:97915908-97926340	Weak transcription Enhancers Strong transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97914400-97917600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:97914600-97917200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:97915400-97916800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:97916200-97917000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:97916200-97917800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:97916400-97917800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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