Variant report

Variant	rs6802326
Chromosome Location	chr3:60743231-60743232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13063937	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4974239	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974255	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974256	0.92[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9311768	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60738000-60743400	Enhancers	NHDF-Ad	bronchial
2	chr3:60739600-60746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:60739800-60746800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:60740400-60744000	Enhancers	Fetal Heart	heart
5	chr3:60740800-60743400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:60741200-60743400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:60741400-60743800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:60741800-60743600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:60741800-60746400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:60742000-60743400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:60742200-60743800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:60742200-60748000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:60742400-60743600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:60742600-60745800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:60743000-60743600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:60743000-60743800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:60743000-60744000	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:60743200-60743400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:60743200-60743600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:60743200-60743800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:60743200-60743800	Enhancers	Spleen	Spleen
22	chr3:60743200-60744000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:60743200-60744000	Enhancers	Primary B cells from cord blood	blood
24	chr3:60743200-60744000	Enhancers	Left Ventricle	heart
25	chr3:60743200-60745000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:60743200-60746400	Enhancers	Primary monocytes fromperipheralblood	blood

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