Variant report

Variant	rs6802901
Chromosome Location	chr3:135732941-135732942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135713331..135715751-chr3:135731248..135733189,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6439606	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779901	1.00[AMR][1000 genomes]
rs6784017	1.00[AMR][1000 genomes]
rs6800142	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72977702	1.00[AMR][1000 genomes]
rs7613398	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135707000-135736400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr3:135707000-135741600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:135710000-135737600	Weak transcription	Left Ventricle	heart
4	chr3:135711800-135737600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:135714000-135735600	Weak transcription	Fetal Heart	heart
6	chr3:135714200-135737600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:135714800-135737600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:135715600-135737000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:135715600-135737600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:135716200-135736400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:135717200-135737600	Weak transcription	NHEK	skin
12	chr3:135717200-135747000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:135717400-135735200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:135717800-135737400	Weak transcription	HSMMtube	muscle
15	chr3:135718000-135753000	Weak transcription	Fetal Kidney	kidney
16	chr3:135718200-135736600	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:135718400-135737200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:135718800-135737600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:135719000-135735600	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:135719000-135741600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:135719200-135746200	Weak transcription	Fetal Intestine Large	intestine
22	chr3:135721800-135763600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr3:135726200-135737600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:135726200-135737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:135726200-135748000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:135726400-135758400	Weak transcription	Lung	lung
27	chr3:135726600-135737600	Weak transcription	Brain Angular Gyrus	brain
28	chr3:135727200-135746600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:135727400-135737600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:135727400-135760600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:135727800-135737400	Weak transcription	HMEC	breast
32	chr3:135727800-135737600	Weak transcription	NHLF	lung
33	chr3:135727800-135741600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:135727800-135741600	Weak transcription	Pancreas	Pancrea
35	chr3:135727800-135769400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr3:135728000-135736400	Weak transcription	Right Ventricle	heart
37	chr3:135728000-135736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:135728000-135737200	Weak transcription	NHDF-Ad	bronchial
39	chr3:135728000-135748000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:135728200-135737000	Weak transcription	Fetal Stomach	stomach
41	chr3:135728200-135746400	Weak transcription	Ovary	ovary
42	chr3:135728800-135737600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:135728800-135737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:135730800-135737600	Weak transcription	HSMM	muscle
45	chr3:135731000-135736200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:135731400-135737200	Weak transcription	Osteobl	bone

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