Variant report

Variant	rs72977702
Chromosome Location	chr3:135615157-135615158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6439606	1.00[AMR][1000 genomes]
rs6784017	1.00[AMR][1000 genomes]
rs6800142	1.00[AMR][1000 genomes]
rs6802901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135613600-135616000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:135613800-135616200	Enhancers	HSMM	muscle
3	chr3:135613800-135617000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:135613800-135617000	Enhancers	NHDF-Ad	bronchial
5	chr3:135614200-135615400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:135614200-135615800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:135614200-135616000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:135614200-135616000	Enhancers	NH-A	brain
9	chr3:135614200-135616000	Enhancers	NHLF	lung
10	chr3:135614200-135616200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:135614200-135616200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:135614200-135616200	Enhancers	HMEC	breast
13	chr3:135614200-135616200	Enhancers	HSMMtube	muscle
14	chr3:135614200-135616200	Enhancers	NHEK	skin
15	chr3:135614200-135616400	Enhancers	Osteobl	bone
16	chr3:135614200-135617000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:135614200-135617000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:135614400-135615400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:135615000-135616000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:135615000-135616600	Enhancers	Placenta	Placenta
21	chr3:135615000-135617000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links