The 2.0 version of rSNPBase

Variant report

Variant rs6803308
Chromosome Location chr3:111722937-111722938
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111718000-111724000 Weak transcription HSMM muscle
2 chr3:111718400-111726400 Weak transcription Aorta Aorta
3 chr3:111718400-111730000 Weak transcription Gastric stomach
4 chr3:111718400-111732200 Weak transcription Lung lung
5 chr3:111718800-111726400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr3:111719000-111729800 Weak transcription Right Ventricle heart
7 chr3:111719200-111724600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr3:111720000-111723400 Transcr. at gene 5' and 3' Fetal Brain Female brain
9 chr3:111720000-111724400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr3:111720000-111724600 Enhancers HMEC breast
11 chr3:111720000-111727800 Weak transcription H9 Cell Line embryonic stem cell
12 chr3:111720200-111723200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr3:111720200-111723400 Transcr. at gene 5' and 3' Ganglion Eminence derived primary cultured neurospheres brain
14 chr3:111720200-111752800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr3:111720600-111730600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:111720800-111723000 Enhancers Primary T cells from cord blood blood
17 chr3:111720800-111723200 Enhancers Fetal Thymus thymus
18 chr3:111720800-111729800 Weak transcription Brain Anterior Caudate brain
19 chr3:111720800-111732200 Weak transcription H1 Cell Line embryonic stem cell
20 chr3:111721400-111723800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr3:111721400-111723800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr3:111721600-111723000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr3:111721600-111724000 Enhancers Fetal Intestine Small intestine
24 chr3:111721800-111723800 Weak transcription NHDF-Ad bronchial
25 chr3:111721800-111724400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr3:111721800-111726600 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
27 chr3:111721800-111732200 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr3:111722000-111723400 Genic enhancers Brain Germinal Matrix brain
29 chr3:111722000-111723600 Weak transcription Osteobl bone
30 chr3:111722000-111723800 Weak transcription Fetal Intestine Large intestine
31 chr3:111722000-111724200 Genic enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr3:111722000-111726600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr3:111722000-111732200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr3:111722200-111723200 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr3:111722200-111723800 Weak transcription Muscle Satellite Cultured Cells --
36 chr3:111722200-111724200 Enhancers Primary T helper cells PMA-I stimulated --
37 chr3:111722200-111726600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr3:111722400-111723400 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr3:111722400-111723400 Weak transcription Placenta Amnion Placenta Amnion
40 chr3:111722400-111726400 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr3:111722600-111723000 Strong transcription Cortex derived primary cultured neurospheres brain
42 chr3:111722600-111723400 Weak transcription Brain Cingulate Gyrus brain
43 chr3:111722600-111723600 Weak transcription NH-A brain
44 chr3:111722600-111723800 Enhancers Fetal Brain Male brain
45 chr3:111722600-111732600 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr3:111722800-111723400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
47 chr3:111722800-111723600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr3:111722800-111723600 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr3:111722800-111724000 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:111722800-111724000 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015