Variant report

Variant	rs6804929
Chromosome Location	chr3:119833578-119833579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:119833274-119833683	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:119833277-119834197	MCF10A-Er-Src	breast:	n/a	chr3:119833999-119834010
3	FOS	chr3:119833279-119834455	MCF10A-Er-Src	breast:	n/a	chr3:119833999-119834010
4	JUND	chr3:119833541-119834326	SK-N-SH	brain:	n/a	chr3:119833999-119834010
5	STAT3	chr3:119833308-119833601	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:119827498..119829754-chr3:119831232..119833677,2	K562	blood:
2	chr3:119831699..119833814-chr3:119838273..119840235,2	MCF-7	breast:
3	chr3:119813101..119815240-chr3:119832233..119834617,2	K562	blood:
4	chr3:119812799..119816595-chr3:119829619..119835566,15	MCF-7	breast:
5	chr3:119831403..119834895-chr3:119845302..119848290,3	MCF-7	breast:
6	chr3:119832637..119834179-chr3:119912112..119915097,2	MCF-7	breast:

Variant related genes	Relation type
RN7SL762P	TF binding region
ENSG00000242622	Chromatin interaction
ENSG00000082701	Chromatin interaction
ENSG00000244308	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16830730	0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv829697	chr3:119802856-119918435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119822000-119835200	Weak transcription	Psoas Muscle	Psoas
2	chr3:119828400-119834600	Weak transcription	Aorta	Aorta
3	chr3:119829400-119834400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:119829400-119834400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:119829400-119834400	Enhancers	HMEC	breast
6	chr3:119829600-119834400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:119830600-119834400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:119831200-119834400	Enhancers	NHDF-Ad	bronchial
9	chr3:119831800-119834200	Enhancers	HSMM	muscle
10	chr3:119831800-119834400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:119831800-119834400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:119831800-119834400	Enhancers	NHLF	lung
13	chr3:119832000-119834200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:119832000-119834200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:119832000-119834400	Enhancers	Osteobl	bone
16	chr3:119832200-119833800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:119832600-119834000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:119832800-119834400	Enhancers	A549	lung
19	chr3:119833200-119836200	Weak transcription	HepG2	liver
20	chr3:119833400-119833600	Enhancers	NHEK	skin

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