Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10461036	0.85[EUR][1000 genomes]
rs10510779	0.84[EUR][1000 genomes]
rs10510780	0.84[EUR][1000 genomes]
rs10510781	0.83[EUR][1000 genomes]
rs11709914	0.80[ASN][1000 genomes]
rs12631548	0.82[EUR][1000 genomes]
rs1458060	0.82[EUR][1000 genomes]
rs1458061	0.82[EUR][1000 genomes]
rs17216524	0.82[EUR][1000 genomes]
rs17235263	0.81[EUR][1000 genomes]
rs17235291	0.81[EUR][1000 genomes]
rs17235305	0.81[EUR][1000 genomes]
rs17235375	0.81[EUR][1000 genomes]
rs17825124	0.86[EUR][1000 genomes]
rs17825183	0.81[EUR][1000 genomes]
rs17825189	0.81[EUR][1000 genomes]
rs17825207	0.81[EUR][1000 genomes]
rs17825213	0.81[EUR][1000 genomes]
rs17825278	0.81[EUR][1000 genomes]
rs35563958	0.82[EUR][1000 genomes]
rs57141558	0.82[EUR][1000 genomes]
rs58375176	0.84[EUR][1000 genomes]
rs61401343	0.82[EUR][1000 genomes]
rs6779691	0.82[EUR][1000 genomes]
rs6797314	0.82[EUR][1000 genomes]
rs73089182	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73091008	0.87[EUR][1000 genomes]
rs73091011	0.85[EUR][1000 genomes]
rs73091012	0.85[EUR][1000 genomes]
rs73091207	0.81[EUR][1000 genomes]
rs73831837	0.81[ASN][1000 genomes]
rs7651932	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012098	chr3:56040905-56055908	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6805331	DUSP7	cis	parietal	SCAN
rs6805331	ARHGEF3	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56048600-56059000	Weak transcription	Fetal Intestine Large	intestine
2	chr3:56052000-56055200	Enhancers	Brain Germinal Matrix	brain
3	chr3:56052600-56055000	Enhancers	Ovary	ovary
4	chr3:56052600-56055200	Enhancers	Fetal Stomach	stomach
5	chr3:56053600-56055200	Enhancers	Fetal Lung	lung
6	chr3:56053800-56057800	Weak transcription	Pancreas	Pancrea
7	chr3:56054200-56059000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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