Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10461036	0.84[EUR][1000 genomes]
rs10510779	0.83[EUR][1000 genomes]
rs10510780	0.83[EUR][1000 genomes]
rs10510781	0.82[EUR][1000 genomes]
rs11709914	0.87[ASN][1000 genomes]
rs12631548	0.81[EUR][1000 genomes]
rs1458060	0.81[EUR][1000 genomes]
rs1458061	0.81[EUR][1000 genomes]
rs17216524	0.81[EUR][1000 genomes]
rs17825124	0.86[EUR][1000 genomes]
rs35563958	0.82[EUR][1000 genomes]
rs57141558	0.81[EUR][1000 genomes]
rs58375176	0.83[EUR][1000 genomes]
rs61401343	0.82[EUR][1000 genomes]
rs6779691	0.81[EUR][1000 genomes]
rs6797314	0.81[EUR][1000 genomes]
rs6805331	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73091008	0.86[EUR][1000 genomes]
rs73091011	0.84[EUR][1000 genomes]
rs73091012	0.84[EUR][1000 genomes]
rs73831837	0.86[ASN][1000 genomes]
rs7651932	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56048600-56059000	Weak transcription	Fetal Intestine Large	intestine
2	chr3:56053800-56057800	Weak transcription	Pancreas	Pancrea
3	chr3:56054200-56059000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:56055000-56056800	Weak transcription	Ovary	ovary
5	chr3:56055200-56059200	Weak transcription	Brain Germinal Matrix	brain

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