Variant report

Variant	rs68066934
Chromosome Location	chr11:101816307-101816308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10791545	0.94[ASN][1000 genomes]
rs10791546	0.90[ASN][1000 genomes]
rs10895228	0.94[ASN][1000 genomes]
rs10895231	0.89[ASN][1000 genomes]
rs11225070	0.99[ASN][1000 genomes]
rs11225080	0.95[ASN][1000 genomes]
rs11225087	0.93[ASN][1000 genomes]
rs11225093	0.89[ASN][1000 genomes]
rs12281520	0.95[ASN][1000 genomes]
rs1274898	0.87[ASN][1000 genomes]
rs1274903	0.89[ASN][1000 genomes]
rs1274904	0.82[ASN][1000 genomes]
rs12802591	0.87[ASN][1000 genomes]
rs1298710	0.85[ASN][1000 genomes]
rs1299588	0.88[ASN][1000 genomes]
rs1372414	0.87[ASN][1000 genomes]
rs1441929	0.86[ASN][1000 genomes]
rs1622630	0.87[ASN][1000 genomes]
rs1661411	0.87[ASN][1000 genomes]
rs2119734	0.95[ASN][1000 genomes]
rs4643040	0.80[ASN][1000 genomes]
rs59927719	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6590940	0.87[ASN][1000 genomes]
rs6590941	0.87[ASN][1000 genomes]
rs7107662	0.91[ASN][1000 genomes]
rs7122772	0.94[ASN][1000 genomes]
rs975810	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv469989	chr11:101790671-101857758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv556140	chr11:101790671-101857758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787200-101820200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:101787400-101818800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:101787400-101820400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:101787400-101827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
9	chr11:101798400-101829200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:101800400-101816400	Weak transcription	Ovary	ovary
11	chr11:101800400-101826400	Weak transcription	Aorta	Aorta
12	chr11:101800400-101830200	Weak transcription	Fetal Lung	lung
13	chr11:101800600-101820400	Weak transcription	Brain Anterior Caudate	brain
14	chr11:101812200-101866600	Weak transcription	Fetal Brain Male	brain
15	chr11:101813000-101831600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:101813600-101818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:101814200-101835800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:101815200-101816600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:101815200-101817200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:101815400-101822000	Weak transcription	Psoas Muscle	Psoas
21	chr11:101815600-101817200	Strong transcription	Adipose Nuclei	Adipose
22	chr11:101815800-101816600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:101815800-101817200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:101816000-101817200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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