Variant report

Variant	rs1274904
Chromosome Location	chr11:101877915-101877916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101877353..101879221-chr11:101982270..101984771,2	MCF-7	breast:
2	chr11:101781201..101783216-chr11:101876018..101878487,2	MCF-7	breast:
3	chr11:101877251..101879953-chr11:101882606..101885074,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137693	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10791545	0.80[ASN][1000 genomes]
rs10791548	0.91[ASN][1000 genomes]
rs10791549	0.88[ASN][1000 genomes]
rs10895228	0.80[ASN][1000 genomes]
rs10895231	0.83[ASN][1000 genomes]
rs11225070	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11225087	0.81[ASN][1000 genomes]
rs11225093	0.85[ASN][1000 genomes]
rs1274898	0.86[ASN][1000 genomes]
rs1274903	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12802591	0.87[ASN][1000 genomes]
rs1298710	0.87[ASN][1000 genomes]
rs1299588	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1372414	0.87[ASN][1000 genomes]
rs1441929	0.85[ASN][1000 genomes]
rs1622630	0.87[ASN][1000 genomes]
rs1661411	0.87[ASN][1000 genomes]
rs1661415	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6590940	0.84[ASN][1000 genomes]
rs6590941	0.87[ASN][1000 genomes]
rs68066934	0.82[ASN][1000 genomes]
rs975810	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101821200-101878400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
3	chr11:101851600-101878200	Weak transcription	HUVEC	blood vessel
4	chr11:101854400-101878200	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:101858400-101878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:101859400-101878200	Weak transcription	NHLF	lung
7	chr11:101859600-101878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:101863600-101878200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:101864000-101878200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:101864200-101878200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:101864200-101878200	Weak transcription	Fetal Brain Female	brain
12	chr11:101864200-101878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:101866600-101878400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:101867000-101880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:101867400-101878000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:101869200-101878200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:101869200-101881400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:101869400-101878400	Weak transcription	Ovary	ovary
19	chr11:101873000-101880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:101873200-101878200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:101873200-101878400	Weak transcription	NHDF-Ad	bronchial
22	chr11:101873400-101881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:101876400-101881600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:101876600-101878800	Enhancers	HepG2	liver
25	chr11:101876600-101880800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:101876800-101878400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:101876800-101881600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:101877200-101878400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:101877400-101878600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:101877600-101878000	Enhancers	Pancreas	Pancrea
31	chr11:101877600-101878600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:101877600-101878600	Enhancers	Stomach Mucosa	stomach
33	chr11:101877600-101878800	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr11:101877600-101878800	Enhancers	Hela-S3	cervix
35	chr11:101877800-101878200	Flanking Active TSS	A549	lung
36	chr11:101877800-101878600	Enhancers	Fetal Intestine Large	intestine
37	chr11:101877800-101878600	Enhancers	Fetal Lung	lung
38	chr11:101877800-101878800	Enhancers	Liver	Liver
39	chr11:101877800-101878800	Enhancers	NHEK	skin

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