Variant report

Variant	rs1661415
Chromosome Location	chr11:101880926-101880927
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101722375..101723959-chr11:101880701..101883311,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1010256	1.00[YRI][hapmap]
rs10791545	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10791548	0.91[ASN][1000 genomes]
rs10791549	0.88[ASN][1000 genomes]
rs10895220	0.81[CHB][hapmap]
rs10895231	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11225049	0.86[CHB][hapmap]
rs11225070	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11225093	0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs1274898	0.82[ASN][1000 genomes]
rs1274903	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1274904	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12802591	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1298710	0.83[ASN][1000 genomes]
rs1299588	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1372414	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1441929	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1622630	0.82[ASN][1000 genomes]
rs1661409	0.86[CHB][hapmap]
rs1661410	0.86[CHB][hapmap]
rs1661411	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17097320	1.00[YRI][hapmap]
rs1783740	0.87[CHB][hapmap]
rs2119734	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2282612	0.86[CHB][hapmap]
rs6590941	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs7107662	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs975810	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
2	chr11:101869200-101881400	Weak transcription	Adipose Nuclei	Adipose
3	chr11:101873400-101881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101876400-101881600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:101876800-101881600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:101878000-101881600	Weak transcription	Fetal Heart	heart
7	chr11:101878600-101881000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:101878600-101881400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:101878600-101881400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:101878600-101881400	Weak transcription	Stomach Mucosa	stomach
11	chr11:101878600-101881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:101878600-101881600	Weak transcription	Fetal Lung	lung
13	chr11:101878600-101882000	Weak transcription	Ovary	ovary
14	chr11:101878800-101881000	Weak transcription	Hela-S3	cervix
15	chr11:101878800-101881000	Weak transcription	NH-A	brain
16	chr11:101878800-101881400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:101878800-101881600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:101878800-101881600	Weak transcription	HepG2	liver
19	chr11:101878800-101881800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:101879000-101881000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:101879000-101881400	Weak transcription	Osteobl	bone
22	chr11:101879000-101881600	Enhancers	A549	lung
23	chr11:101879400-101884400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:101880400-101884600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:101880600-101881400	Enhancers	NHEK	skin
26	chr11:101880600-101881600	Enhancers	NHDF-Ad	bronchial
27	chr11:101880600-101882400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:101880600-101882600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:101880600-101882600	Enhancers	HMEC	breast
30	chr11:101880600-101882600	Enhancers	NHLF	lung
31	chr11:101880600-101882800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:101880800-101881000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:101880800-101881400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:101880800-101881600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr11:101880800-101881600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:101880800-101881600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:101880800-101881600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:101880800-101881600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:101880800-101881800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:101880800-101881800	Enhancers	Fetal Intestine Large	intestine
41	chr11:101880800-101882200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:101880800-101882200	Enhancers	Esophagus	oesophagus
43	chr11:101880800-101882600	Enhancers	HUVEC	blood vessel
44	chr11:101880800-101882800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:101880800-101882800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:101880800-101882800	Enhancers	HSMM	muscle
47	chr11:101880800-101885800	Enhancers	Placenta	Placenta

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