Variant report

Variant	rs10791548
Chromosome Location	chr11:101882109-101882110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101555926..101558823-chr11:101880932..101883184,2	MCF-7	breast:
2	chr11:101722375..101723959-chr11:101880701..101883311,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10791545	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10791549	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895231	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11225093	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12284492	0.90[AFR][1000 genomes]
rs1274898	0.84[ASN][1000 genomes]
rs1274903	0.84[ASN][1000 genomes]
rs1274904	0.91[ASN][1000 genomes]
rs12802591	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1298710	0.85[ASN][1000 genomes]
rs1299588	0.81[ASN][1000 genomes]
rs1372414	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1441929	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1622630	0.85[ASN][1000 genomes]
rs1661411	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1661415	0.91[ASN][1000 genomes]
rs2119734	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6590940	0.82[ASN][1000 genomes]
rs6590941	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7107662	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs975810	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
2	chr11:101879400-101884400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:101880400-101884600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:101880600-101882400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:101880600-101882600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:101880600-101882600	Enhancers	HMEC	breast
7	chr11:101880600-101882600	Enhancers	NHLF	lung
8	chr11:101880600-101882800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:101880800-101882200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:101880800-101882200	Enhancers	Esophagus	oesophagus
11	chr11:101880800-101882600	Enhancers	HUVEC	blood vessel
12	chr11:101880800-101882800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:101880800-101882800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:101880800-101882800	Enhancers	HSMM	muscle
15	chr11:101880800-101885800	Enhancers	Placenta	Placenta
16	chr11:101881000-101882600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:101881000-101882600	Enhancers	Fetal Intestine Small	intestine
18	chr11:101881000-101882600	Enhancers	NH-A	brain
19	chr11:101881400-101882200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:101881400-101882200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:101881400-101882200	Enhancers	Stomach Mucosa	stomach
22	chr11:101881400-101882200	Flanking Active TSS	NHEK	skin
23	chr11:101881400-101882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:101881600-101882200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:101881600-101882200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:101881600-101882200	Enhancers	Fetal Heart	heart
27	chr11:101881600-101882200	Enhancers	Fetal Lung	lung
28	chr11:101881600-101882200	Enhancers	Fetal Muscle Leg	muscle
29	chr11:101881600-101882200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:101881600-101882200	Flanking Active TSS	Hela-S3	cervix
31	chr11:101881600-101882400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:101881600-101882400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:101881600-101882400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:101881600-101882400	Enhancers	HSMMtube	muscle
35	chr11:101881800-101882200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:101881800-101882200	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr11:101881800-101882200	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:101881800-101882200	Enhancers	Fetal Stomach	stomach
39	chr11:101881800-101882200	Enhancers	Right Atrium	heart
40	chr11:101881800-101883200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:101881800-101885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:101882000-101882200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:101882000-101882200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr11:101882000-101882200	Enhancers	Ovary	ovary
45	chr11:101882000-101882200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:101882000-101882200	Flanking Active TSS	Osteobl	bone
47	chr11:101882000-101882400	Flanking Active TSS	A549	lung
48	chr11:101882000-101882600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:101882000-101882600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:101882000-101882600	Enhancers	NHDF-Ad	bronchial

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