Variant report

Variant	rs6806971
Chromosome Location	chr3:160241088-160241089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1141023	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17236389	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17236452	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17236487	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17826161	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1882124	0.87[ASN][1000 genomes]
rs1882128	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920648	0.87[ASN][1000 genomes]
rs1920654	0.87[ASN][1000 genomes]
rs1979160	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2029361	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152424	0.88[ASN][1000 genomes]
rs2272489	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281166	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41272955	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41272957	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4254702	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4434183	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679883	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4679887	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679894	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680577	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680582	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680590	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853078	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56051094	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56322040	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6776582	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780828	0.87[ASN][1000 genomes]
rs73154549	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73154552	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73154567	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73154591	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73154596	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73154600	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73154602	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73155903	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73155920	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155922	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155924	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622031	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9826290	0.96[ASN][1000 genomes]
rs9845172	0.87[ASN][1000 genomes]
rs9847144	0.87[ASN][1000 genomes]
rs9876980	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
7	esv1801686	chr3:160089896-160248363	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	211 gene(s)	inside rSNPs	diseases
8	esv1797113	chr3:160217483-160245980	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv877700	chr3:160223172-160248363	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv877701	chr3:160228001-160283815	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
11	esv1846377	chr3:160232432-160245980	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160215600-160254200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr3:160215800-160254000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:160215800-160254200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:160215800-160254200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:160216000-160254200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:160216200-160249200	Strong transcription	Liver	Liver
7	chr3:160216200-160254200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:160216400-160254400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:160216800-160253800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:160217200-160254000	Strong transcription	Dnd41	blood
11	chr3:160217400-160259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:160218800-160244800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:160219800-160242200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:160219800-160263600	Weak transcription	Right Ventricle	heart
15	chr3:160220600-160246200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:160220600-160261200	Weak transcription	Pancreas	Pancrea
17	chr3:160221600-160249000	Strong transcription	HUVEC	blood vessel
18	chr3:160222200-160244600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:160223400-160243000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:160225600-160259800	Weak transcription	Stomach Mucosa	stomach
21	chr3:160226000-160244000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:160229000-160253400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:160229200-160247000	Strong transcription	Adipose Nuclei	Adipose
24	chr3:160229200-160252800	Strong transcription	Fetal Thymus	thymus
25	chr3:160229200-160253400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:160229200-160253400	Strong transcription	Osteobl	bone
27	chr3:160229200-160253600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:160229200-160254000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:160229200-160254000	Strong transcription	Placenta	Placenta
30	chr3:160229600-160245200	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:160229600-160253400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:160229600-160253600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:160229800-160253200	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:160229800-160253400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:160229800-160253600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:160229800-160253600	Strong transcription	HSMM	muscle
37	chr3:160229800-160253800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:160230000-160249800	Strong transcription	Fetal Intestine Large	intestine
39	chr3:160230000-160252800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:160230000-160253000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:160230000-160253600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:160230000-160254000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:160230200-160253600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:160230400-160241200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:160230400-160245200	Strong transcription	Fetal Muscle Leg	muscle
46	chr3:160230400-160253000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr3:160230400-160253200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:160230400-160253400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:160230600-160244600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:160230600-160247200	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links