Variant report

Variant	rs9826290
Chromosome Location	chr3:160317348-160317349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10513556	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1141023	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17236452	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17826161	0.92[ASN][1000 genomes]
rs1882124	0.91[ASN][1000 genomes]
rs1882128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1920645	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1920648	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1920654	0.91[ASN][1000 genomes]
rs2029361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2272489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs35281166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs41272955	0.92[ASN][1000 genomes]
rs41272957	0.92[ASN][1000 genomes]
rs4254702	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4434183	0.96[ASN][1000 genomes]
rs4635753	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4679883	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4679887	0.96[ASN][1000 genomes]
rs4679894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4680582	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4680590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55853078	0.92[ASN][1000 genomes]
rs56051094	0.92[ASN][1000 genomes]
rs56322040	0.92[ASN][1000 genomes]
rs6780828	0.91[ASN][1000 genomes]
rs6806971	0.96[ASN][1000 genomes]
rs73154567	0.85[ASN][1000 genomes]
rs73154591	0.92[ASN][1000 genomes]
rs73154596	0.92[ASN][1000 genomes]
rs73154600	0.92[ASN][1000 genomes]
rs73154602	0.92[ASN][1000 genomes]
rs73155903	0.92[ASN][1000 genomes]
rs73155920	0.96[ASN][1000 genomes]
rs73155922	0.96[ASN][1000 genomes]
rs73155924	0.96[ASN][1000 genomes]
rs7622031	0.92[ASN][1000 genomes]
rs9812531	0.85[EUR][1000 genomes]
rs9845172	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9847144	0.91[ASN][1000 genomes]
rs9876980	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv4089	chr3:160284848-160330024	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160316400-160317800	Enhancers	Liver	Liver
2	chr3:160317200-160317600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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