Variant report

Variant	rs6807211
Chromosome Location	chr3:158053119-158053120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28402668	1.00[AMR][1000 genomes]
rs57550995	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441190	1.00[AMR][1000 genomes]
rs6441192	1.00[AMR][1000 genomes]
rs6767072	1.00[AMR][1000 genomes]
rs6776674	1.00[AMR][1000 genomes]
rs6786849	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6787212	1.00[AMR][1000 genomes]
rs73013322	0.92[AFR][1000 genomes]
rs73017444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017464	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017470	1.00[AMR][1000 genomes]
rs73028775	1.00[AMR][1000 genomes]
rs73028802	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7627082	1.00[AMR][1000 genomes]
rs7635356	1.00[AMR][1000 genomes]
rs9829790	1.00[AMR][1000 genomes]
rs9843252	1.00[AMR][1000 genomes]
rs9872642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157993400-158054600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:158047000-158055400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:158047800-158064800	Weak transcription	Ovary	ovary
4	chr3:158047800-158077800	Weak transcription	Gastric	stomach
5	chr3:158048000-158054000	Weak transcription	Left Ventricle	heart
6	chr3:158048000-158056400	Weak transcription	Esophagus	oesophagus
7	chr3:158048000-158059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:158048200-158053800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:158048200-158079400	Weak transcription	Right Ventricle	heart
10	chr3:158050000-158054200	Weak transcription	Dnd41	blood
11	chr3:158052200-158053800	Weak transcription	Thymus	Thymus
12	chr3:158052200-158054400	Weak transcription	Primary B cells from cord blood	blood
13	chr3:158052400-158053200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:158052600-158054200	Weak transcription	Aorta	Aorta
15	chr3:158052600-158059200	Weak transcription	Lung	lung

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