Variant report

Variant	rs73017464
Chromosome Location	chr3:158107929-158107930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158100498..158103302-chr3:158106866..158108793,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28402668	1.00[AMR][1000 genomes]
rs57550995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441190	1.00[AMR][1000 genomes]
rs6441192	1.00[AMR][1000 genomes]
rs6767072	1.00[AMR][1000 genomes]
rs6776674	1.00[AMR][1000 genomes]
rs6786849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6787212	1.00[AMR][1000 genomes]
rs6807211	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013322	0.82[AFR][1000 genomes]
rs73017444	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028775	1.00[AMR][1000 genomes]
rs73028802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7627082	1.00[AMR][1000 genomes]
rs7635356	1.00[AMR][1000 genomes]
rs9829790	1.00[AMR][1000 genomes]
rs9843252	1.00[AMR][1000 genomes]
rs9872642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1004480	chr3:158102068-158129826	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536776	chr3:158102068-158129826	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158100800-158113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:158107400-158108000	Enhancers	Stomach Mucosa	stomach
3	chr3:158107600-158108000	Enhancers	HepG2	liver
4	chr3:158107800-158108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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