Variant report

Variant	rs6807744
Chromosome Location	chr3:25234499-25234500
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1843029	0.84[EUR][1000 genomes]
rs28668494	1.00[EUR][1000 genomes]
rs58927428	1.00[EUR][1000 genomes]
rs6774463	0.91[EUR][1000 genomes]
rs73145391	1.00[EUR][1000 genomes]
rs73149268	0.84[EUR][1000 genomes]
rs73151258	1.00[EUR][1000 genomes]
rs73151265	0.84[EUR][1000 genomes]
rs73151268	1.00[EUR][1000 genomes]
rs7610341	1.00[EUR][1000 genomes]
rs7642261	1.00[EUR][1000 genomes]
rs9870811	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25234000-25234800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:25234400-25234800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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