Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1843029	0.84[EUR][1000 genomes]
rs28668494	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58927428	1.00[EUR][1000 genomes]
rs6774463	0.91[EUR][1000 genomes]
rs6807744	1.00[EUR][1000 genomes]
rs73145391	1.00[EUR][1000 genomes]
rs73149268	0.84[EUR][1000 genomes]
rs73151258	1.00[EUR][1000 genomes]
rs73151265	0.84[EUR][1000 genomes]
rs73151268	1.00[EUR][1000 genomes]
rs7610341	1.00[EUR][1000 genomes]
rs9870811	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
2	chr3:25196400-25199600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:25196800-25200400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:25197600-25205200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:25197800-25200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:25198200-25200600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:25198400-25199800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:25198400-25200000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:25198400-25200600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:25198400-25200600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:25198600-25199600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:25198600-25201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:25198600-25201200	Weak transcription	Fetal Heart	heart
14	chr3:25198600-25211200	Weak transcription	Fetal Stomach	stomach
15	chr3:25198800-25199600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:25198800-25199800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:25198800-25200000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr3:25198800-25200600	Weak transcription	HSMM	muscle
19	chr3:25198800-25207000	Weak transcription	Fetal Lung	lung
20	chr3:25199200-25200400	Weak transcription	H1 Cell Line	embryonic stem cell

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