Variant report

Variant	rs68089821
Chromosome Location	chr3:21431853-21431854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1395992	0.92[AMR][1000 genomes]
rs17008550	0.85[AMR][1000 genomes]
rs17008560	0.89[AMR][1000 genomes]
rs1828081	0.89[AMR][1000 genomes]
rs4857992	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4857993	0.87[AMR][1000 genomes]
rs6775859	0.82[AMR][1000 genomes]
rs72625842	0.89[AMR][1000 genomes]
rs72625843	0.89[AMR][1000 genomes]
rs72625844	0.89[AMR][1000 genomes]
rs768737	0.85[AMR][1000 genomes]
rs920121	0.83[AMR][1000 genomes]
rs987222	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21424200-21432800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21431200-21432000	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:21431200-21432200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:21431200-21432200	Enhancers	NHDF-Ad	bronchial
5	chr3:21431200-21432800	Enhancers	NH-A	brain
6	chr3:21431200-21435400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:21431600-21432000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:21431800-21432000	Enhancers	Aorta	Aorta
9	chr3:21431800-21432200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:21431800-21432600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:21431800-21433600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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