Variant report

Variant	rs6809065
Chromosome Location	chr3:52708441-52708442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52707546..52709318-chr3:52716439..52718303,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1344932	0.83[AFR][1000 genomes]
rs17052322	0.88[AFR][1000 genomes]
rs17052355	0.88[AFR][1000 genomes]
rs17052424	0.85[AFR][1000 genomes]
rs1971811	0.88[AFR][1000 genomes]
rs41415947	0.88[AFR][1000 genomes]
rs56815357	0.88[AFR][1000 genomes]
rs57401769	0.88[AFR][1000 genomes]
rs57607481	0.88[AFR][1000 genomes]
rs57931767	0.97[AFR][1000 genomes]
rs59182119	0.86[AFR][1000 genomes]
rs59789322	0.91[AFR][1000 genomes]
rs60351358	0.94[AFR][1000 genomes]
rs6767229	0.91[AFR][1000 genomes]
rs6779626	0.94[AFR][1000 genomes]
rs6796577	1.00[AFR][1000 genomes]
rs6803865	0.91[AFR][1000 genomes]
rs7615320	0.83[AFR][1000 genomes]
rs7616059	0.93[AFR][1000 genomes]
rs7649820	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:52637200-52715800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:52642600-52711200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:52650000-52712200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:52655200-52716400	Strong transcription	Fetal Thymus	thymus
7	chr3:52665400-52719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:52670800-52715400	Strong transcription	Dnd41	blood
9	chr3:52681200-52716200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr3:52684800-52709000	Weak transcription	Stomach Mucosa	stomach
11	chr3:52688000-52714800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:52693800-52709400	Weak transcription	Right Ventricle	heart
13	chr3:52696000-52712000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:52696200-52711800	Weak transcription	Aorta	Aorta
15	chr3:52696400-52710200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:52697600-52710200	Weak transcription	Fetal Brain Male	brain
17	chr3:52698800-52714400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:52699400-52715600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:52700000-52710800	Weak transcription	Small Intestine	intestine
20	chr3:52700600-52715000	Strong transcription	Primary B cells from cord blood	blood
21	chr3:52701800-52715600	Strong transcription	Brain Germinal Matrix	brain
22	chr3:52702000-52714400	Strong transcription	Fetal Lung	lung
23	chr3:52703600-52712200	Strong transcription	Liver	Liver
24	chr3:52703600-52716000	Strong transcription	Fetal Brain Female	brain
25	chr3:52703800-52713400	Strong transcription	Primary T cells from cord blood	blood
26	chr3:52703800-52715800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:52704000-52709000	Strong transcription	Fetal Intestine Small	intestine
28	chr3:52704000-52709200	Strong transcription	Fetal Stomach	stomach
29	chr3:52704000-52712800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:52704000-52714200	Strong transcription	Thymus	Thymus
31	chr3:52704000-52714600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:52704000-52716000	Strong transcription	Fetal Muscle Leg	muscle
33	chr3:52704400-52714000	Strong transcription	Fetal Intestine Large	intestine
34	chr3:52704600-52714200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr3:52704800-52711000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:52704800-52715600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr3:52705000-52710600	Weak transcription	Spleen	Spleen
38	chr3:52705000-52713000	Weak transcription	Right Atrium	heart
39	chr3:52705000-52714000	Strong transcription	Brain Anterior Caudate	brain
40	chr3:52705000-52714400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr3:52705200-52715200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr3:52705400-52709000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:52705600-52714600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:52705600-52715000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:52705600-52715200	Strong transcription	Placenta	Placenta
46	chr3:52705600-52715800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:52705800-52709000	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:52705800-52715600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:52706000-52710600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:52706000-52714200	Strong transcription	H1 Cell Line	embryonic stem cell

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