Variant report

Variant	rs6809208
Chromosome Location	chr3:178542817-178542818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178539180..178542360-chr3:178542522..178544332,3	K562	blood:
2	chr3:178539075..178542360-chr3:178542522..178545217,3	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10804873	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs10936978	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10936979	0.81[ASN][1000 genomes]
rs11709071	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11716970	0.88[ASN][1000 genomes]
rs11721205	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11914342	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11916314	0.88[ASN][1000 genomes]
rs11924270	0.89[ASN][1000 genomes]
rs11927078	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs11927700	0.88[ASN][1000 genomes]
rs11929676	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs13090876	0.88[ASN][1000 genomes]
rs28490096	0.88[ASN][1000 genomes]
rs28733874	0.88[ASN][1000 genomes]
rs3856779	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4076993	0.81[ASN][1000 genomes]
rs4076994	0.81[ASN][1000 genomes]
rs4076995	0.81[ASN][1000 genomes]
rs4131862	0.88[ASN][1000 genomes]
rs4131863	0.88[ASN][1000 genomes]
rs4257520	0.81[ASN][1000 genomes]
rs4257521	0.81[ASN][1000 genomes]
rs4258946	0.82[JPT][hapmap]
rs4414829	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4440105	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4498018	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4498019	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs4502560	0.81[ASN][1000 genomes]
rs4541384	0.81[ASN][1000 genomes]
rs4542999	0.82[JPT][hapmap]
rs4549252	0.82[JPT][hapmap]
rs4608671	0.81[ASN][1000 genomes]
rs4624543	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4990553	0.81[ASN][1000 genomes]
rs60725021	0.88[ASN][1000 genomes]
rs61798137	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6443581	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6443582	1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6443583	0.80[CHB][hapmap]
rs6765556	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6765682	0.90[ASN][1000 genomes]
rs6767499	0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6779867	0.88[ASN][1000 genomes]
rs6780023	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs6783516	0.81[ASN][1000 genomes]
rs6789905	0.90[ASN][1000 genomes]
rs6789945	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6796611	0.81[ASN][1000 genomes]
rs6796969	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803203	0.81[ASN][1000 genomes]
rs6804163	0.88[ASN][1000 genomes]
rs73053720	0.88[ASN][1000 genomes]
rs73053731	0.90[ASN][1000 genomes]
rs73053734	0.88[ASN][1000 genomes]
rs73053748	0.88[ASN][1000 genomes]
rs7374878	0.81[ASN][1000 genomes]
rs7618149	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7640000	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7642594	0.87[CHB][hapmap]
rs7643872	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7646198	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9814677	0.88[ASN][1000 genomes]
rs9817052	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9817191	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9819352	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9819394	0.88[ASN][1000 genomes]
rs9819552	0.84[ASN][1000 genomes]
rs9819671	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9824836	1.00[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs9826474	0.81[ASN][1000 genomes]
rs9828010	0.88[ASN][1000 genomes]
rs9828148	0.88[ASN][1000 genomes]
rs9828153	0.88[ASN][1000 genomes]
rs9831934	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9833798	0.90[ASN][1000 genomes]
rs9837702	0.88[ASN][1000 genomes]
rs9844423	0.81[ASN][1000 genomes]
rs9844536	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844737	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9851600	0.89[ASN][1000 genomes]
rs9853141	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9853436	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9855019	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9857688	0.81[ASN][1000 genomes]
rs9857760	0.88[ASN][1000 genomes]
rs9875237	0.81[ASN][1000 genomes]
rs9882015	0.81[ASN][1000 genomes]
rs9883312	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6809208	TTC14	cis	parietal	SCAN
rs6809208	ABCF3	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178541600-178544200	Weak transcription	HSMM	muscle
3	chr3:178541600-178547000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:178541800-178544800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:178541800-178547800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:178541800-178550600	Weak transcription	Fetal Kidney	kidney
7	chr3:178542000-178543200	Weak transcription	Ovary	ovary
8	chr3:178542000-178543800	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:178542000-178544000	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:178542000-178547200	Weak transcription	Fetal Stomach	stomach
11	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
12	chr3:178542200-178544000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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