Variant report

Variant	rs11927078
Chromosome Location	chr3:178550121-178550122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178545028..178546976-chr3:178549794..178552747,2	K562	blood:
2	chr3:178543542..178551305-chr3:178552157..178562303,11	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10804873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10936978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10936979	1.00[CEU][hapmap]
rs11709071	0.87[CHB][hapmap]
rs11721205	0.87[CHB][hapmap]
rs11914342	0.87[CHB][hapmap]
rs11929676	0.87[CHB][hapmap]
rs3856779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4076994	1.00[CEU][hapmap]
rs4076995	1.00[CEU][hapmap]
rs4258946	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4414829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4440105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs4498018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4498019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4542999	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4549252	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4624542	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs4624543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs4990553	1.00[CEU][hapmap]
rs6443581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6443582	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs6443583	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6765556	0.87[CHB][hapmap]
rs6767499	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs6780023	0.88[CHB][hapmap]
rs6787441	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs6789945	0.87[CHB][hapmap]
rs6809208	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7618149	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7640000	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7642594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7643872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7646198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9817052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9817191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9819352	0.88[CHB][hapmap]
rs9819671	0.87[CHB][hapmap]
rs9824836	0.87[CHB][hapmap]
rs9826474	1.00[CEU][hapmap]
rs9831934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs9844423	1.00[CEU][hapmap]
rs9844536	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9844737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs9853141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9853436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9855019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9883312	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1841956	chr3:178545276-178550530	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3436263	chr3:178548158-178552756	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3500799	chr3:178548729-178551340	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3328220	chr3:178549008-178552006	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3355849	chr3:178549083-178552231	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv513094	chr3:178549377-178551412	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3425836	chr3:178549433-178551906	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3462912	chr3:178549510-178551113	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv2536068	chr3:178549681-178551779	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3462913	chr3:178549805-178551300	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv820302	chr3:178549813-178550938	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv5860	chr3:178549884-178551134	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv2299103	chr3:178549935-178551059	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3462908	chr3:178549997-178550970	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3500804	chr3:178550015-178550981	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3500802	chr3:178550037-178550954	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3500803	chr3:178550039-178550908	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3462909	chr3:178550048-178550943	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3462911	chr3:178550055-178550944	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3462910	chr3:178550069-178550891	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3500801	chr3:178550074-178550919	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3328811	chr3:178550094-178550893	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3462906	chr3:178550115-178550879	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178541800-178550600	Weak transcription	Fetal Kidney	kidney
3	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
4	chr3:178543600-178551200	Weak transcription	Ovary	ovary
5	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:178547800-178550400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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