Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17006109	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17006112	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56000524	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56376392	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57046732	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58220383	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6766227	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6778947	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6779068	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6781288	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72937475	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72937490	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72937492	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73835889	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73835891	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7616224	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7617897	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7620140	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7650789	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7651010	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1004470	chr3:69597148-69728231	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69592400-69604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69592400-69607600	Weak transcription	Right Ventricle	heart
3	chr3:69598600-69602800	Weak transcription	Fetal Kidney	kidney
4	chr3:69600000-69600800	Enhancers	Brain Angular Gyrus	brain
5	chr3:69600000-69601400	Enhancers	Fetal Lung	lung
6	chr3:69600600-69600800	Enhancers	Fetal Heart	heart

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