Variant report

Variant	rs7616224
Chromosome Location	chr3:69593020-69593021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17006109	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17006112	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56000524	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56376392	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57046732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58220383	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6766227	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6778947	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6779068	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6781288	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6809787	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72937475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72937490	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72937492	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73835889	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73835891	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7617897	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7620140	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7650789	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7651010	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69592400-69596800	Weak transcription	Brain Substantia Nigra	brain
2	chr3:69592400-69604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:69592400-69607600	Weak transcription	Right Ventricle	heart
4	chr3:69592600-69593400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:69592600-69596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:69592600-69596600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:69592600-69600000	Weak transcription	Fetal Heart	heart
8	chr3:69592800-69597600	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:69593000-69593200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
10	chr3:69593000-69595400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:69593000-69596600	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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