Variant report

Variant	rs6810452
Chromosome Location	chr4:127470903-127470904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11098883	0.92[ASN][1000 genomes]
rs11098884	0.91[ASN][1000 genomes]
rs12233787	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12233912	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12500193	0.82[CEU][hapmap]
rs13123040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1355403	0.91[ASN][1000 genomes]
rs1542999	0.92[ASN][1000 genomes]
rs1543000	0.92[ASN][1000 genomes]
rs1606111	0.91[ASN][1000 genomes]
rs17197887	0.91[CEU][hapmap]
rs17257398	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs313086	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs313094	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs401403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57096105	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6823628	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs992181	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6810452	INTU	cis	cerebellum	SCAN
rs6810452	FYTTD1	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127469200-127474400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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