Variant report

Variant	rs1543000
Chromosome Location	chr4:127458938-127458939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11098883	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11729344	0.82[AFR][1000 genomes]
rs12233787	0.80[ASN][1000 genomes]
rs13123040	0.95[ASN][1000 genomes]
rs1355403	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1542999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1553874	0.81[EUR][1000 genomes]
rs1606111	0.99[ASN][1000 genomes]
rs2221682	0.82[AFR][1000 genomes]
rs313086	0.94[ASN][1000 genomes]
rs313094	0.84[ASN][1000 genomes]
rs313104	0.82[YRI][hapmap]
rs401403	0.95[ASN][1000 genomes]
rs6810452	0.92[ASN][1000 genomes]
rs6823628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs992181	0.97[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127454800-127459400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:127455000-127460000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:127456400-127459600	Strong transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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