Variant report

Variant	rs1553874
Chromosome Location	chr4:127468878-127468879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11098883	0.80[AFR][1000 genomes]
rs11098884	0.82[EUR][1000 genomes]
rs12505400	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12511369	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13151348	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1355403	0.84[AFR][1000 genomes]
rs1355404	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1511135	0.83[AFR][1000 genomes]
rs1542999	0.84[EUR][1000 genomes]
rs1543000	0.81[EUR][1000 genomes]
rs17011198	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17197887	0.83[CHB][hapmap]
rs17257398	0.84[CHB][hapmap]
rs667581	0.84[AFR][1000 genomes]
rs6823628	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72672008	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127467800-127469200	Genic enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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