Variant report

Variant	rs667581
Chromosome Location	chr4:127474567-127474568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10002417	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11729344	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1355405	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1511135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1553874	0.84[AFR][1000 genomes]
rs192856	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs2102544	0.82[AFR][1000 genomes]
rs2202824	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2221682	0.84[AFR][1000 genomes]
rs3103670	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs313051	0.80[AFR][1000 genomes]
rs313062	0.83[AMR][1000 genomes]
rs313089	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs313090	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs313104	0.84[YRI][hapmap]
rs992182	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127474400-127474600	Enhancers	K562	blood
2	chr4:127474400-127474800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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