Variant report
| Variant | rs313089 |
|---|---|
| Chromosome Location | chr4:127477923-127477924 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10002417 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1355405 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1511135 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs192856 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2102544 | 0.84[AFR][1000 genomes] |
| rs2202824 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3103670 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3103671 | 1.00[EUR][1000 genomes] |
| rs3103672 | 1.00[EUR][1000 genomes] |
| rs3114042 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3114043 | 1.00[EUR][1000 genomes] |
| rs313051 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs313052 | 1.00[EUR][1000 genomes] |
| rs313062 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs313090 | 0.88[AFR][1000 genomes] |
| rs313091 | 1.00[EUR][1000 genomes] |
| rs313106 | 1.00[EUR][1000 genomes] |
| rs313126 | 1.00[EUR][1000 genomes] |
| rs313127 | 1.00[EUR][1000 genomes] |
| rs313141 | 1.00[EUR][1000 genomes] |
| rs313143 | 1.00[EUR][1000 genomes] |
| rs313145 | 1.00[EUR][1000 genomes] |
| rs368317 | 1.00[EUR][1000 genomes] |
| rs378245 | 1.00[EUR][1000 genomes] |
| rs404298 | 1.00[EUR][1000 genomes] |
| rs425619 | 1.00[EUR][1000 genomes] |
| rs426134 | 1.00[EUR][1000 genomes] |
| rs434214 | 1.00[EUR][1000 genomes] |
| rs439910 | 1.00[EUR][1000 genomes] |
| rs667581 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs992182 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012833 | chr4:127468474-127760933 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv537242 | chr4:127468474-127760933 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv524850 | chr4:127470903-127768849 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127474800-127493400 | Weak transcription | K562 | blood |
