Variant report

Variant	rs2102544
Chromosome Location	chr4:127505617-127505618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10002417	0.87[AFR][1000 genomes]
rs1355405	0.87[AFR][1000 genomes]
rs1511135	0.81[AFR][1000 genomes]
rs192856	0.98[AFR][1000 genomes]
rs2202824	0.87[AFR][1000 genomes]
rs3103670	1.00[AFR][1000 genomes]
rs3114042	0.95[AFR][1000 genomes]
rs313051	0.98[AFR][1000 genomes]
rs313062	0.92[AFR][1000 genomes]
rs313089	0.84[AFR][1000 genomes]
rs313090	0.83[AFR][1000 genomes]
rs313106	0.86[AFR][1000 genomes]
rs404298	0.86[AFR][1000 genomes]
rs4293799	0.91[AFR][1000 genomes]
rs434214	0.86[AFR][1000 genomes]
rs667581	0.82[AFR][1000 genomes]
rs992182	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127504200-127516200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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