Variant report

Variant	rs68107418
Chromosome Location	chr12:44838720-44838721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44835745..44837877-chr12:44838477..44840498,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10880632	0.94[ASN][1000 genomes]
rs11182486	0.94[ASN][1000 genomes]
rs11182490	0.94[ASN][1000 genomes]
rs11182493	0.94[ASN][1000 genomes]
rs11182495	0.94[ASN][1000 genomes]
rs11182496	0.94[ASN][1000 genomes]
rs11182497	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182501	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182517	0.81[ASN][1000 genomes]
rs11611818	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612521	0.94[ASN][1000 genomes]
rs12297907	0.94[ASN][1000 genomes]
rs12301564	0.94[ASN][1000 genomes]
rs12308701	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12308760	0.94[ASN][1000 genomes]
rs12308816	0.82[ASN][1000 genomes]
rs12310262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311228	0.94[ASN][1000 genomes]
rs12317228	0.94[ASN][1000 genomes]
rs12318553	0.94[ASN][1000 genomes]
rs12319211	0.94[ASN][1000 genomes]
rs12319354	0.94[ASN][1000 genomes]
rs1353143	0.88[ASN][1000 genomes]
rs1353145	0.94[ASN][1000 genomes]
rs1353146	0.94[ASN][1000 genomes]
rs1353147	0.94[ASN][1000 genomes]
rs1493755	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094634	0.94[ASN][1000 genomes]
rs17094695	0.81[ASN][1000 genomes]
rs17121322	0.94[ASN][1000 genomes]
rs1873978	0.94[ASN][1000 genomes]
rs1873980	0.94[ASN][1000 genomes]
rs1873981	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55781129	0.81[ASN][1000 genomes]
rs55962853	0.81[ASN][1000 genomes]
rs56020032	0.81[ASN][1000 genomes]
rs56115011	0.94[ASN][1000 genomes]
rs56318423	0.81[ASN][1000 genomes]
rs59255697	0.81[ASN][1000 genomes]
rs60837979	0.81[ASN][1000 genomes]
rs7132743	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134756	0.94[ASN][1000 genomes]
rs7299010	0.81[ASN][1000 genomes]
rs7302676	0.81[ASN][1000 genomes]
rs73094334	0.94[ASN][1000 genomes]
rs7309948	0.88[ASN][1000 genomes]
rs74085067	0.81[ASN][1000 genomes]
rs74085071	0.81[ASN][1000 genomes]
rs74085073	0.81[ASN][1000 genomes]
rs74085078	0.81[ASN][1000 genomes]
rs751921	0.94[ASN][1000 genomes]
rs7953681	0.81[ASN][1000 genomes]
rs7957832	0.81[ASN][1000 genomes]
rs7958300	0.81[ASN][1000 genomes]
rs7958770	0.81[ASN][1000 genomes]
rs7960681	0.81[ASN][1000 genomes]
rs7961768	0.94[EUR][1000 genomes]
rs7962332	0.94[ASN][1000 genomes]
rs7964751	0.94[ASN][1000 genomes]
rs7965110	0.94[ASN][1000 genomes]
rs7965383	0.94[ASN][1000 genomes]
rs7969400	0.94[ASN][1000 genomes]
rs7969428	0.94[ASN][1000 genomes]
rs7969614	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7970601	0.81[ASN][1000 genomes]
rs7971520	0.81[ASN][1000 genomes]
rs7972882	0.94[ASN][1000 genomes]
rs7978776	0.94[ASN][1000 genomes]
rs7979642	0.81[ASN][1000 genomes]
rs840772	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44823400-44839400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:44838000-44838800	Enhancers	GM12878-XiMat	blood
3	chr12:44838200-44839000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links