Variant report

Variant	rs7970601
Chromosome Location	chr12:44900321-44900322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10506245	1.00[JPT][hapmap]
rs10880632	0.87[ASN][1000 genomes]
rs11182486	0.87[ASN][1000 genomes]
rs11182490	0.87[ASN][1000 genomes]
rs11182493	0.87[ASN][1000 genomes]
rs11182495	0.87[ASN][1000 genomes]
rs11182496	0.87[ASN][1000 genomes]
rs11182497	0.81[ASN][1000 genomes]
rs11182501	0.81[ASN][1000 genomes]
rs11182517	1.00[ASN][1000 genomes]
rs11611818	0.81[ASN][1000 genomes]
rs11612521	0.87[ASN][1000 genomes]
rs12297907	0.87[ASN][1000 genomes]
rs12301564	0.87[ASN][1000 genomes]
rs12308701	0.81[ASN][1000 genomes]
rs12308760	0.87[ASN][1000 genomes]
rs12310262	0.81[ASN][1000 genomes]
rs12311228	0.87[ASN][1000 genomes]
rs12317228	0.87[ASN][1000 genomes]
rs12318553	0.87[ASN][1000 genomes]
rs12319211	0.87[ASN][1000 genomes]
rs12319354	0.87[ASN][1000 genomes]
rs1353143	0.81[ASN][1000 genomes]
rs1353145	0.87[ASN][1000 genomes]
rs1353146	0.87[ASN][1000 genomes]
rs1353147	0.87[ASN][1000 genomes]
rs1493755	0.81[ASN][1000 genomes]
rs1527315	1.00[JPT][hapmap]
rs17094634	0.87[ASN][1000 genomes]
rs17094695	1.00[ASN][1000 genomes]
rs17094740	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17121322	0.87[ASN][1000 genomes]
rs1716605	1.00[JPT][hapmap]
rs1716609	1.00[JPT][hapmap]
rs1726884	1.00[JPT][hapmap]
rs1726889	1.00[JPT][hapmap]
rs1798023	1.00[JPT][hapmap]
rs1798032	1.00[JPT][hapmap]
rs1873978	0.87[ASN][1000 genomes]
rs1873980	0.87[ASN][1000 genomes]
rs1873981	0.81[ASN][1000 genomes]
rs4639992	1.00[JPT][hapmap]
rs4768559	1.00[JPT][hapmap]
rs55781129	1.00[ASN][1000 genomes]
rs55962853	1.00[ASN][1000 genomes]
rs56020032	1.00[ASN][1000 genomes]
rs56115011	0.87[ASN][1000 genomes]
rs56318423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59255697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60837979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68107418	0.81[ASN][1000 genomes]
rs7132743	0.81[ASN][1000 genomes]
rs7134756	0.87[ASN][1000 genomes]
rs7299010	1.00[ASN][1000 genomes]
rs7302676	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094334	0.87[ASN][1000 genomes]
rs7309948	0.94[ASN][1000 genomes]
rs7314412	1.00[JPT][hapmap]
rs74085040	0.91[EUR][1000 genomes]
rs74085067	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74085071	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74085073	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74085078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74085081	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74085082	0.88[EUR][1000 genomes]
rs751921	0.87[ASN][1000 genomes]
rs7953681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957832	1.00[ASN][1000 genomes]
rs7958300	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958770	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960681	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962332	0.87[ASN][1000 genomes]
rs7964751	0.87[ASN][1000 genomes]
rs7965110	0.87[ASN][1000 genomes]
rs7965383	0.87[ASN][1000 genomes]
rs7969400	0.87[ASN][1000 genomes]
rs7969428	0.87[ASN][1000 genomes]
rs7969466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7969614	0.81[ASN][1000 genomes]
rs7971520	1.00[ASN][1000 genomes]
rs7972882	0.87[ASN][1000 genomes]
rs7978776	0.87[ASN][1000 genomes]
rs7979642	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840773	1.00[JPT][hapmap]
rs840774	1.00[JPT][hapmap]
rs859016	1.00[JPT][hapmap]
rs863482	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44894800-44901400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:44894800-44901400	Weak transcription	Fetal Brain Female	brain
3	chr12:44898600-44904800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:44899400-44900600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:44900000-44901600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:44900200-44912600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:44900200-44915400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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