Variant report

Variant	rs6811160
Chromosome Location	chr4:143038768-143038769
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10018171	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10018345	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10026333	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10029467	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10030014	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10030954	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10032149	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10032157	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10032328	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10032526	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10033103	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12330961	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12331260	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12498546	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12500675	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12508643	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12511892	0.81[AFR][1000 genomes]
rs12639936	0.85[AFR][1000 genomes]
rs12642756	0.85[AFR][1000 genomes]
rs17015544	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17015559	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28373344	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28458916	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28588595	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3775640	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3822140	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55666838	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55839609	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56334109	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6813782	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6813798	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6827500	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6827870	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6828680	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6829180	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6837581	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6842783	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6845623	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6850756	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6853904	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9990925	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9995208	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9995231	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9997383	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9999736	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9999840	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv428775	chr4:142943213-143050195	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142990000-143051200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:143001400-143040600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:143002600-143041800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:143004600-143051600	Weak transcription	Pancreas	Pancrea
5	chr4:143010400-143043400	Weak transcription	Psoas Muscle	Psoas
6	chr4:143010400-143057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:143012400-143040600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:143014600-143049600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:143015800-143049600	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:143017800-143044400	Weak transcription	Fetal Heart	heart
11	chr4:143018800-143109600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:143022400-143045200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:143022600-143049600	Weak transcription	NHDF-Ad	bronchial
14	chr4:143025400-143066800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:143030000-143041600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:143030000-143049400	Weak transcription	Left Ventricle	heart
17	chr4:143030000-143057000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:143030200-143041800	Weak transcription	NHEK	skin
19	chr4:143031000-143064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:143031800-143048000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:143032000-143041400	Weak transcription	HSMMtube	muscle
22	chr4:143032000-143041600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:143032000-143042000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr4:143032000-143043200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:143032000-143049600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:143032400-143041200	Weak transcription	HSMM	muscle
27	chr4:143032400-143041600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:143032800-143040400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:143034000-143040400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:143034000-143041600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:143034000-143041800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:143034000-143048400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:143034000-143061600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:143034800-143041600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:143035000-143040400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:143035000-143041200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:143035200-143041400	Weak transcription	HMEC	breast
38	chr4:143035600-143041000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:143035600-143041200	Weak transcription	Dnd41	blood
40	chr4:143035800-143040600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:143035800-143040600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:143035800-143041200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr4:143036000-143040400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:143036000-143041600	Weak transcription	Primary T cells from cord blood	blood
45	chr4:143036200-143041000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:143036200-143041400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:143036400-143040400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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