Variant report

Variant	rs6812088
Chromosome Location	chr4:100865331-100865332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59943674	1.00[AFR][1000 genomes]
rs61449090	1.00[AFR][1000 genomes]
rs6811087	1.00[AFR][1000 genomes]
rs6813690	1.00[AFR][1000 genomes]
rs6828260	1.00[AFR][1000 genomes]
rs72913027	1.00[AFR][1000 genomes]
rs72913044	1.00[AFR][1000 genomes]
rs72915005	1.00[AFR][1000 genomes]
rs72915012	0.86[AFR][1000 genomes]
rs72915030	1.00[AFR][1000 genomes]
rs72915043	1.00[AFR][1000 genomes]
rs7685657	1.00[AFR][1000 genomes]
rs7688078	0.90[AFR][1000 genomes]
rs7690273	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100816000-100867000	Weak transcription	Lung	lung
3	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
5	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
6	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
8	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:100840200-100865800	Weak transcription	Ovary	ovary
11	chr4:100840200-100866000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:100840200-100867000	Weak transcription	Gastric	stomach
13	chr4:100840400-100866800	Weak transcription	Aorta	Aorta
14	chr4:100840400-100867000	Weak transcription	Esophagus	oesophagus
15	chr4:100847800-100866200	Weak transcription	HSMMtube	muscle
16	chr4:100848400-100866200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:100852000-100865400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:100852200-100866000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:100855800-100866000	Weak transcription	Colonic Mucosa	Colon
20	chr4:100856200-100866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:100856800-100865400	Weak transcription	Brain Angular Gyrus	brain
22	chr4:100856800-100866000	Weak transcription	Fetal Brain Male	brain
23	chr4:100856800-100866200	Weak transcription	NH-A	brain
24	chr4:100857000-100866000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:100857000-100866200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:100857200-100866200	Weak transcription	Thymus	Thymus
27	chr4:100857200-100866200	Weak transcription	Spleen	Spleen
28	chr4:100857800-100865400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:100857800-100866000	Weak transcription	Fetal Kidney	kidney
30	chr4:100857800-100866000	Weak transcription	NHLF	lung
31	chr4:100857800-100866200	Weak transcription	HMEC	breast
32	chr4:100857800-100866400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:100858000-100865400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:100858000-100866000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:100858000-100866000	Weak transcription	NHDF-Ad	bronchial
36	chr4:100858000-100866200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:100858000-100866200	Weak transcription	Fetal Brain Female	brain
38	chr4:100858000-100866200	Weak transcription	Fetal Thymus	thymus
39	chr4:100858200-100866000	Weak transcription	Osteobl	bone
40	chr4:100858600-100865600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:100858800-100865600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr4:100858800-100865800	Weak transcription	Fetal Intestine Large	intestine
43	chr4:100858800-100866000	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:100859000-100865400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:100859000-100865400	Weak transcription	Fetal Intestine Small	intestine
46	chr4:100859000-100865600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr4:100859000-100866000	Weak transcription	Fetal Stomach	stomach
48	chr4:100859000-100866000	Weak transcription	A549	lung
49	chr4:100859000-100866200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:100859000-100866200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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