Variant report

Variant	rs72915012
Chromosome Location	chr4:100839858-100839859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100837896..100840734-chr4:100841683..100843412,2	MCF-7	breast:
2	chr4:100768566..100770766-chr4:100839767..100842129,2	K562	blood:
3	chr4:100838599..100840413-chr4:100870184..100872469,2	MCF-7	breast:
4	chr4:100829396..100833198-chr4:100836822..100839868,3	MCF-7	breast:
5	chr4:100837674..100840166-chr4:100869128..100872455,4	K562	blood:
6	chr4:100834943..100837070-chr4:100838734..100840986,2	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59943674	0.86[AFR][1000 genomes]
rs61449090	0.86[AFR][1000 genomes]
rs6811087	0.86[AFR][1000 genomes]
rs6812088	0.86[AFR][1000 genomes]
rs6813690	0.86[AFR][1000 genomes]
rs6828260	0.86[AFR][1000 genomes]
rs72913027	0.86[AFR][1000 genomes]
rs72913044	0.86[AFR][1000 genomes]
rs72915005	0.86[AFR][1000 genomes]
rs72915030	0.86[AFR][1000 genomes]
rs72915043	0.86[AFR][1000 genomes]
rs7685657	0.86[AFR][1000 genomes]
rs7690273	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100815600-100840000	Weak transcription	Small Intestine	intestine
2	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:100816000-100867000	Weak transcription	Lung	lung
4	chr4:100816200-100840200	Weak transcription	Colonic Mucosa	Colon
5	chr4:100816200-100842200	Weak transcription	Pancreas	Pancrea
6	chr4:100816200-100851400	Weak transcription	A549	lung
7	chr4:100816200-100851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:100816200-100853600	Weak transcription	NHLF	lung
9	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:100816400-100845800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:100816600-100841800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:100816600-100843800	Weak transcription	Right Ventricle	heart
13	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
14	chr4:100823600-100845600	Weak transcription	Hela-S3	cervix
15	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
16	chr4:100824400-100847000	Weak transcription	Brain Angular Gyrus	brain
17	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:100824800-100854200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:100826200-100844000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:100827600-100856400	Weak transcription	Brain Substantia Nigra	brain
21	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
22	chr4:100829200-100856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:100829400-100852600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:100829400-100856200	Weak transcription	HepG2	liver
26	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:100829800-100840000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:100836000-100842600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:100836200-100846600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:100836600-100840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:100836600-100856800	Weak transcription	Spleen	Spleen
32	chr4:100836800-100847400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:100836800-100851800	Strong transcription	Dnd41	blood
34	chr4:100837400-100840400	Strong transcription	Thymus	Thymus
35	chr4:100837600-100842000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:100837600-100852600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:100838000-100840400	Strong transcription	Left Ventricle	heart
38	chr4:100838200-100840200	Strong transcription	HMEC	breast
39	chr4:100838200-100840800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr4:100838200-100850200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr4:100838400-100840200	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr4:100838400-100840200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
43	chr4:100838400-100840200	ZNF genes & repeats	Primary T cells from cord blood	blood
44	chr4:100838400-100840200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:100838400-100840200	ZNF genes & repeats	Brain Germinal Matrix	brain
46	chr4:100838400-100840200	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr4:100838400-100840400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:100838400-100840400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr4:100838400-100840400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:100838400-100840400	Strong transcription	Liver	Liver

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