Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10755172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933112	0.90[AFR][1000 genomes]
rs11939220	0.91[AFR][1000 genomes]
rs11943069	0.90[AFR][1000 genomes]
rs11943708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944080	0.90[AFR][1000 genomes]
rs11947199	0.90[AFR][1000 genomes]
rs12108607	1.00[AMR][1000 genomes]
rs28597913	0.90[AFR][1000 genomes]
rs34686165	0.90[AFR][1000 genomes]
rs4470593	1.00[AMR][1000 genomes]
rs4694161	1.00[ASW][hapmap]
rs4694162	0.82[YRI][hapmap]
rs4694163	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6446919	1.00[AMR][1000 genomes]
rs6446923	1.00[AMR][1000 genomes]
rs6819123	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6822941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6824868	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6841419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6841614	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847770	0.86[LWK][hapmap];1.00[AMR][1000 genomes]
rs9917908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6812309	FAM118A	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74183400-74203000	Weak transcription	Liver	Liver
2	chr4:74193400-74194200	Enhancers	HepG2	liver

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