Variant report

Variant	rs6822941
Chromosome Location	chr4:74199873-74199874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10755172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933112	0.82[AFR][1000 genomes]
rs11939220	0.88[AFR][1000 genomes]
rs11943069	0.82[AFR][1000 genomes]
rs11943708	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944080	0.82[AFR][1000 genomes]
rs11947199	0.82[AFR][1000 genomes]
rs12108607	1.00[AMR][1000 genomes]
rs28597913	0.82[AFR][1000 genomes]
rs34686165	0.82[AFR][1000 genomes]
rs4470593	1.00[AMR][1000 genomes]
rs4694163	0.83[AFR][1000 genomes]
rs6446919	1.00[AMR][1000 genomes]
rs6446923	1.00[AMR][1000 genomes]
rs6812309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6819123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6824868	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6841419	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6841614	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847770	1.00[AMR][1000 genomes]
rs9917908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74183400-74203000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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