Variant report

Variant	rs6815399
Chromosome Location	chr4:69739411-69739412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10028938	0.85[EUR][1000 genomes]
rs11722451	0.87[EUR][1000 genomes]
rs11724821	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11725119	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11725502	0.85[EUR][1000 genomes]
rs11731269	0.81[EUR][1000 genomes]
rs11734565	0.82[EUR][1000 genomes]
rs11735873	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11737527	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11737644	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11737672	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1902932	0.89[EUR][1000 genomes]
rs2331559	0.80[EUR][1000 genomes]
rs294759	0.80[EUR][1000 genomes]
rs294770	0.80[EUR][1000 genomes]
rs294775	0.81[EUR][1000 genomes]
rs294778	0.90[EUR][1000 genomes]
rs34100980	0.87[EUR][1000 genomes]
rs61749966	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61750900	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6600854	0.88[EUR][1000 genomes]
rs6600855	0.88[EUR][1000 genomes]
rs6830149	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6836520	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72846859	0.82[EUR][1000 genomes]
rs7657958	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7658577	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7660491	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7661050	0.88[EUR][1000 genomes]
rs7665996	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7671312	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674919	0.88[EUR][1000 genomes]
rs7676146	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7676529	0.89[EUR][1000 genomes]
rs7678526	0.81[EUR][1000 genomes]
rs7685333	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7687748	0.87[EUR][1000 genomes]
rs7687951	0.88[EUR][1000 genomes]
rs7698940	0.88[EUR][1000 genomes]
rs835309	0.90[EUR][1000 genomes]
rs835315	0.90[EUR][1000 genomes]
rs835316	0.83[EUR][1000 genomes]
rs835317	0.90[EUR][1000 genomes]
rs9993124	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv879378	chr4:69673775-69771935	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv2757063	chr4:69685048-69747559	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3398036	chr4:69700493-69841391	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
11	nsv967756	chr4:69726911-69750058	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69737200-69741000	Enhancers	Fetal Intestine Small	intestine
2	chr4:69737400-69741000	Enhancers	Fetal Intestine Large	intestine
3	chr4:69738600-69745400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:69739200-69740000	Enhancers	Liver	Liver
5	chr4:69739200-69740000	Enhancers	Pancreas	Pancrea
6	chr4:69739200-69741200	Enhancers	HepG2	liver
7	chr4:69739200-69744200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:69739400-69743400	Weak transcription	Stomach Mucosa	stomach

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