Variant report

Variant	rs72846859
Chromosome Location	chr4:69611058-69611059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10000284	0.88[EUR][1000 genomes]
rs10010381	0.91[EUR][1000 genomes]
rs10010497	0.91[EUR][1000 genomes]
rs10028938	0.92[EUR][1000 genomes]
rs11722451	0.94[EUR][1000 genomes]
rs11724821	0.82[EUR][1000 genomes]
rs11725000	0.92[EUR][1000 genomes]
rs11725119	0.88[EUR][1000 genomes]
rs11725502	0.89[EUR][1000 genomes]
rs11726045	0.91[EUR][1000 genomes]
rs11731269	0.96[EUR][1000 genomes]
rs11734565	0.97[EUR][1000 genomes]
rs11735873	0.81[EUR][1000 genomes]
rs11736654	0.92[EUR][1000 genomes]
rs11737527	0.94[EUR][1000 genomes]
rs11737644	0.90[EUR][1000 genomes]
rs11737672	0.94[EUR][1000 genomes]
rs11931829	0.83[ASN][1000 genomes]
rs12651636	0.91[ASN][1000 genomes]
rs17146778	1.00[ASN][1000 genomes]
rs17146785	1.00[ASN][1000 genomes]
rs17146907	0.91[ASN][1000 genomes]
rs1902932	0.90[EUR][1000 genomes]
rs1913316	0.91[ASN][1000 genomes]
rs2137646	1.00[ASN][1000 genomes]
rs2175776	0.92[EUR][1000 genomes]
rs2331437	0.92[EUR][1000 genomes]
rs2331438	0.92[EUR][1000 genomes]
rs2331439	0.92[EUR][1000 genomes]
rs2331559	0.89[EUR][1000 genomes]
rs2926036	0.81[EUR][1000 genomes]
rs2926038	0.92[EUR][1000 genomes]
rs2942856	0.92[EUR][1000 genomes]
rs294759	0.89[EUR][1000 genomes]
rs294770	0.89[EUR][1000 genomes]
rs294775	0.88[EUR][1000 genomes]
rs294778	0.92[EUR][1000 genomes]
rs3100654	1.00[ASN][1000 genomes]
rs34100980	0.94[EUR][1000 genomes]
rs35502751	1.00[ASN][1000 genomes]
rs3792628	0.91[ASN][1000 genomes]
rs56068220	0.91[EUR][1000 genomes]
rs57176367	1.00[ASN][1000 genomes]
rs57251507	0.91[ASN][1000 genomes]
rs57290492	0.83[ASN][1000 genomes]
rs57504651	0.91[EUR][1000 genomes]
rs57633916	1.00[ASN][1000 genomes]
rs57889376	0.91[ASN][1000 genomes]
rs57970648	1.00[ASN][1000 genomes]
rs58330002	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58752434	1.00[ASN][1000 genomes]
rs58813047	0.91[EUR][1000 genomes]
rs59108315	1.00[ASN][1000 genomes]
rs59166765	0.91[ASN][1000 genomes]
rs60199344	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61301802	0.91[ASN][1000 genomes]
rs61360717	0.91[ASN][1000 genomes]
rs61749966	0.92[EUR][1000 genomes]
rs61750900	0.92[EUR][1000 genomes]
rs6600854	0.82[EUR][1000 genomes]
rs6600855	0.82[EUR][1000 genomes]
rs6815399	0.82[EUR][1000 genomes]
rs6830149	0.81[EUR][1000 genomes]
rs6833082	1.00[ASN][1000 genomes]
rs6836520	0.90[EUR][1000 genomes]
rs72846860	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72846861	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72846868	1.00[ASN][1000 genomes]
rs72848040	0.91[EUR][1000 genomes]
rs72848044	1.00[ASN][1000 genomes]
rs72848056	0.92[EUR][1000 genomes]
rs7657958	0.92[EUR][1000 genomes]
rs7658577	0.81[EUR][1000 genomes]
rs7660491	0.88[EUR][1000 genomes]
rs7661050	0.82[EUR][1000 genomes]
rs7665996	0.82[EUR][1000 genomes]
rs7671312	0.94[EUR][1000 genomes]
rs7674919	0.82[EUR][1000 genomes]
rs7676146	0.92[EUR][1000 genomes]
rs7676529	0.90[EUR][1000 genomes]
rs7685333	0.92[EUR][1000 genomes]
rs7687748	0.84[EUR][1000 genomes]
rs7687951	0.82[EUR][1000 genomes]
rs7698940	0.82[EUR][1000 genomes]
rs835309	0.92[EUR][1000 genomes]
rs835315	0.92[EUR][1000 genomes]
rs835316	0.87[EUR][1000 genomes]
rs835317	0.92[EUR][1000 genomes]
rs844342	0.81[EUR][1000 genomes]
rs861340	0.83[EUR][1000 genomes]
rs9329034	0.93[EUR][1000 genomes]
rs983346	1.00[ASN][1000 genomes]
rs983347	1.00[ASN][1000 genomes]
rs9993124	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757061	chr4:69178920-69631668	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2763366	chr4:69592847-69661427	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013885	chr4:69592847-69667996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv594579	chr4:69597175-69665970	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1014042	chr4:69599853-69667996	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv13953	chr4:69608522-69614042	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69602800-69613400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:69609400-69612000	Enhancers	Stomach Mucosa	stomach
3	chr4:69609400-69612200	Enhancers	Fetal Intestine Large	intestine
4	chr4:69609800-69612000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr4:69609800-69615400	Enhancers	Fetal Intestine Small	intestine
6	chr4:69610000-69611800	Enhancers	Duodenum Mucosa	Duodenum
7	chr4:69610000-69612000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:69610600-69611200	Flanking Active TSS	HepG2	liver
9	chr4:69610600-69611400	Active TSS	A549	lung
10	chr4:69610800-69611800	Weak transcription	Gastric	stomach

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