Variant report

Variant	rs59166765
Chromosome Location	chr4:69681711-69681712
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr4:69681428-69681962	HepG2	liver:	n/a	n/a
2	TCF12	chr4:69681321-69681955	HepG2	liver:	n/a	chr4:69681563-69681572
3	TEAD4	chr4:69681157-69684369	HepG2	liver:	n/a	n/a
4	NR3C1	chr4:69681371-69681786	A549	lung:	n/a	n/a
5	HNF4G	chr4:69681640-69681868	HepG2	liver:	n/a	n/a
6	HNF4G	chr4:69681304-69681776	HepG2	liver:	n/a	chr4:69681581-69681595
7	MAFF	chr4:69681456-69681922	HepG2	liver:	n/a	chr4:69681756-69681774
8	EP300	chr4:69681295-69681781	A549	lung:	n/a	chr4:69681630-69681640
9	FOXA2	chr4:69681645-69681893	HepG2	liver:	n/a	n/a
10	JUN	chr4:69681504-69681787	HepG2	liver:	n/a	n/a
11	TBP	chr4:69681517-69681946	HepG2	liver:	n/a	n/a
12	TEAD4	chr4:69681409-69681915	HepG2	liver:	n/a	n/a
13	NFIC	chr4:69681261-69682153	HepG2	liver:	n/a	n/a
14	RXRA	chr4:69681351-69681897	HepG2	liver:	n/a	n/a
15	NR3C1	chr4:69681432-69681765	A549	lung:	n/a	n/a
16	POLR2A	chr4:69681575-69682842	HepG2	liver:	n/a	n/a
17	FOXA2	chr4:69681236-69681888	A549	lung:	n/a	n/a
18	EP300	chr4:69681482-69681788	HepG2	liver:	n/a	chr4:69681630-69681640
19	HEY1	chr4:69681556-69683461	HepG2	liver:	n/a	n/a
20	RAD21	chr4:69681361-69681922	HepG2	liver:	n/a	n/a
21	FOSL2	chr4:69681428-69682033	HepG2	liver:	n/a	n/a
22	EP300	chr4:69681270-69682024	HepG2	liver:	n/a	chr4:69681630-69681640
23	HNF4A	chr4:69681390-69681894	HepG2	liver:	n/a	chr4:69681581-69681595 chr4:69681580-69681595
24	POLR2A	chr4:69681523-69683072	HepG2	liver:	n/a	n/a
25	MAFK	chr4:69681466-69681911	HepG2	liver:	n/a	n/a
26	SP1	chr4:69681312-69681821	A549	lung:	n/a	n/a
27	JUND	chr4:69681398-69681992	HepG2	liver:	n/a	n/a
28	FOXA2	chr4:69681230-69681970	A549	lung:	n/a	n/a
29	SMC3	chr4:69681364-69681828	HepG2	liver:	n/a	n/a
30	JUND	chr4:69681481-69681741	HepG2	liver:	n/a	n/a
31	SP1	chr4:69681221-69681878	A549	lung:	n/a	n/a
32	MYBL2	chr4:69681148-69684482	HepG2	liver:	n/a	n/a
33	REST	chr4:69681643-69681878	HepG2	liver:	n/a	n/a
34	BHLHE40	chr4:69681403-69681779	HepG2	liver:	n/a	n/a
35	FOXA1	chr4:69681274-69681920	HepG2	liver:	n/a	chr4:69681561-69681576
36	HNF4A	chr4:69681273-69681922	HepG2	liver:	n/a	chr4:69681581-69681595 chr4:69681580-69681595
37	ZBTB33	chr4:69681337-69682030	HepG2	liver:	n/a	n/a
38	CEBPB	chr4:69681686-69681867	HepG2	liver:	n/a	n/a
39	JUND	chr4:69681682-69681950	HepG2	liver:	n/a	n/a
40	FOXA1	chr4:69681266-69682503	HepG2	liver:	n/a	chr4:69681561-69681576
41	NR3C1	chr4:69681334-69681992	A549	lung:	n/a	n/a
42	POLR2A	chr4:69681603-69681965	HepG2	liver:	n/a	n/a
43	REST	chr4:69681321-69681944	HepG2	liver:	n/a	n/a
44	RAD21	chr4:69681691-69681871	HepG2	liver:	n/a	n/a
45	RCOR1	chr4:69681602-69681824	HepG2	liver:	n/a	n/a
46	POLR2A	chr4:69681590-69681985	HepG2	liver:	n/a	n/a
47	TCF12	chr4:69681097-69681986	A549	lung:	n/a	chr4:69681563-69681572
48	MBD4	chr4:69681244-69684224	HepG2	liver:	n/a	n/a
49	MBD4	chr4:69681635-69682083	HepG2	liver:	n/a	n/a
50	SP1	chr4:69681185-69682500	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
UGT2B10	TF binding region

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11931829	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935894	0.83[ASN][1000 genomes]
rs12644440	0.88[AFR][1000 genomes]
rs12649493	0.91[ASN][1000 genomes]
rs12651636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458233	1.00[EUR][1000 genomes]
rs17146778	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146785	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147037	1.00[EUR][1000 genomes]
rs17147040	1.00[EUR][1000 genomes]
rs1913316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090002	0.85[ASN][1000 genomes]
rs2137646	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs294761	1.00[EUR][1000 genomes]
rs3100654	0.91[ASN][1000 genomes]
rs35502751	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3792628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176367	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57251507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57290492	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57633916	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57732489	1.00[EUR][1000 genomes]
rs57889376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57970648	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58330002	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58752434	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59108315	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59706854	0.83[ASN][1000 genomes]
rs60199344	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61140783	1.00[EUR][1000 genomes]
rs61301802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61360717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6600851	1.00[EUR][1000 genomes]
rs6833082	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837879	1.00[EUR][1000 genomes]
rs72846859	0.91[ASN][1000 genomes]
rs72846860	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72846861	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72846868	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72848024	1.00[EUR][1000 genomes]
rs72848044	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72849047	0.85[AFR][1000 genomes]
rs73823929	1.00[EUR][1000 genomes]
rs983346	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs983347	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594580	chr4:69629425-69706273	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1005777	chr4:69665571-69713817	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv869970	chr4:69665769-69713522	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1007851	chr4:69667996-69713817	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2760902	chr4:69668008-69723767	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1004225	chr4:69670507-69707300	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1003090	chr4:69670507-69708718	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1012268	chr4:69670507-69709072	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1009628	chr4:69670507-69713817	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2421961	chr4:69671302-69709072	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1006812	chr4:69671377-69708718	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv879378	chr4:69673775-69771935	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	esv15609	chr4:69678187-69717872	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1007139	chr4:69678883-69713817	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv998687	chr4:69678883-69717203	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1001923	chr4:69678883-69737036	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv441886	chr4:69678895-69717215	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv980211	chr4:69679045-69697777	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
23	esv3692825	chr4:69679570-69715945	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
24	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69679600-69681800	Enhancers	HepG2	liver
2	chr4:69681000-69682600	Enhancers	A549	lung
3	chr4:69681200-69681800	Weak transcription	Liver	Liver
4	chr4:69681400-69682000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:69681600-69684000	Enhancers	HUES48 Cell Line	embryonic stem cell

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