Variant report

Variant	rs72848024
Chromosome Location	chr4:69627697-69627698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69627049..69629916-chr4:69637911..69640559,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11931829	1.00[EUR][1000 genomes]
rs12651636	1.00[EUR][1000 genomes]
rs1458233	1.00[EUR][1000 genomes]
rs17146778	1.00[EUR][1000 genomes]
rs17146785	1.00[EUR][1000 genomes]
rs17146907	1.00[EUR][1000 genomes]
rs1913316	1.00[EUR][1000 genomes]
rs2137646	1.00[EUR][1000 genomes]
rs294761	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35502751	1.00[EUR][1000 genomes]
rs3792628	1.00[EUR][1000 genomes]
rs57176367	1.00[EUR][1000 genomes]
rs57251507	1.00[EUR][1000 genomes]
rs57290492	1.00[EUR][1000 genomes]
rs57633916	1.00[EUR][1000 genomes]
rs57732489	1.00[EUR][1000 genomes]
rs57889376	1.00[EUR][1000 genomes]
rs57970648	1.00[EUR][1000 genomes]
rs58330002	1.00[EUR][1000 genomes]
rs58752434	1.00[EUR][1000 genomes]
rs59108315	1.00[EUR][1000 genomes]
rs59166765	1.00[EUR][1000 genomes]
rs60199344	1.00[EUR][1000 genomes]
rs61140783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61301802	1.00[EUR][1000 genomes]
rs61360717	1.00[EUR][1000 genomes]
rs6600851	1.00[EUR][1000 genomes]
rs6833082	1.00[EUR][1000 genomes]
rs6837879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846860	1.00[EUR][1000 genomes]
rs72846861	1.00[EUR][1000 genomes]
rs72846868	1.00[EUR][1000 genomes]
rs72848044	1.00[EUR][1000 genomes]
rs73823929	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983346	1.00[EUR][1000 genomes]
rs983347	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757061	chr4:69178920-69631668	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2763366	chr4:69592847-69661427	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013885	chr4:69592847-69667996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv594579	chr4:69597175-69665970	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1014042	chr4:69599853-69667996	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69627000-69627800	ZNF genes & repeats	Fetal Intestine Small	intestine

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