Variant report

Variant	rs11931829
Chromosome Location	chr4:69732974-69732975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69730473..69734007-chr4:69770100..69773388,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272626	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11935894	0.91[ASN][1000 genomes]
rs12649493	1.00[ASN][1000 genomes]
rs12651636	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1458233	1.00[EUR][1000 genomes]
rs17146778	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17146785	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17146907	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17147037	1.00[EUR][1000 genomes]
rs17147040	1.00[EUR][1000 genomes]
rs1913316	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2137646	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs294761	1.00[EUR][1000 genomes]
rs3100654	0.83[ASN][1000 genomes]
rs35502751	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3792628	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57176367	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57251507	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57290492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57633916	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57732489	1.00[EUR][1000 genomes]
rs57889376	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57970648	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58330002	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58752434	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58994091	0.86[AFR][1000 genomes]
rs59108315	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59166765	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59706854	0.91[ASN][1000 genomes]
rs60199344	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61140783	1.00[EUR][1000 genomes]
rs61301802	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61360717	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6600851	1.00[EUR][1000 genomes]
rs6833082	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6837879	1.00[EUR][1000 genomes]
rs72846859	0.83[ASN][1000 genomes]
rs72846860	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72846861	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72846868	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72848024	1.00[EUR][1000 genomes]
rs72848044	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73823929	1.00[EUR][1000 genomes]
rs983346	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs983347	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv879378	chr4:69673775-69771935	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001923	chr4:69678883-69737036	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	esv2757063	chr4:69685048-69747559	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3398036	chr4:69700493-69841391	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
10	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
11	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv967756	chr4:69726911-69750058	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69719800-69736600	Weak transcription	Pancreas	Pancrea
2	chr4:69729600-69733000	Enhancers	Fetal Intestine Small	intestine
3	chr4:69730600-69733200	Enhancers	HepG2	liver
4	chr4:69730600-69736400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:69730600-69738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:69731400-69736400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:69731800-69733600	Weak transcription	Liver	Liver
8	chr4:69732400-69737000	Weak transcription	Stomach Mucosa	stomach
9	chr4:69732600-69734800	Weak transcription	Fetal Intestine Large	intestine
10	chr4:69732800-69733000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links