Variant report

Variant	rs3792628
Chromosome Location	chr4:69687075-69687076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11931829	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935894	0.83[ASN][1000 genomes]
rs12644440	0.86[AFR][1000 genomes]
rs12649493	0.91[ASN][1000 genomes]
rs12651636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458233	1.00[EUR][1000 genomes]
rs17146778	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146785	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147037	1.00[EUR][1000 genomes]
rs17147040	1.00[EUR][1000 genomes]
rs1913316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090002	0.85[ASN][1000 genomes]
rs2137646	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs294761	1.00[EUR][1000 genomes]
rs3100654	0.91[ASN][1000 genomes]
rs35502751	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57176367	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57251507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57290492	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57633916	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57732489	1.00[EUR][1000 genomes]
rs57889376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57970648	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58330002	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58752434	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59108315	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59166765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59706854	0.83[ASN][1000 genomes]
rs60199344	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61140783	1.00[EUR][1000 genomes]
rs61301802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61360717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6600851	1.00[EUR][1000 genomes]
rs6833082	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837879	1.00[EUR][1000 genomes]
rs72846859	0.91[ASN][1000 genomes]
rs72846860	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72846861	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72846868	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72848024	1.00[EUR][1000 genomes]
rs72848044	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72849047	0.83[AFR][1000 genomes]
rs73823929	1.00[EUR][1000 genomes]
rs983346	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs983347	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv829961	chr4:69592847-69695467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594580	chr4:69629425-69706273	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1005777	chr4:69665571-69713817	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv869970	chr4:69665769-69713522	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1007851	chr4:69667996-69713817	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2760902	chr4:69668008-69723767	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1004225	chr4:69670507-69707300	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1003090	chr4:69670507-69708718	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1012268	chr4:69670507-69709072	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1009628	chr4:69670507-69713817	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2421961	chr4:69671302-69709072	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1006812	chr4:69671377-69708718	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv879378	chr4:69673775-69771935	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	esv15609	chr4:69678187-69717872	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1007139	chr4:69678883-69713817	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv998687	chr4:69678883-69717203	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1001923	chr4:69678883-69737036	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv441886	chr4:69678895-69717215	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv980211	chr4:69679045-69697777	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
23	esv3692825	chr4:69679570-69715945	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
24	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
25	nsv461547	chr4:69684121-69706273	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
26	nsv594581	chr4:69684121-69706273	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
27	nsv1000898	chr4:69684740-69713817	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
28	nsv1004704	chr4:69684740-69717203	Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
29	nsv1000723	chr4:69684740-69718302	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
30	nsv1014651	chr4:69685048-69713817	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
31	nsv1007447	chr4:69685048-69723767	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
32	esv2757063	chr4:69685048-69747559	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69686000-69688000	Weak transcription	HepG2	liver
2	chr4:69687000-69687200	Flanking Active TSS	Liver	Liver

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