Variant report
| Variant | rs6815771 |
|---|---|
| Chromosome Location | chr4:74402884-74402885 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10003753 | 1.00[EUR][1000 genomes] |
| rs10018515 | 1.00[EUR][1000 genomes] |
| rs10018813 | 1.00[EUR][1000 genomes] |
| rs10018842 | 1.00[EUR][1000 genomes] |
| rs10021754 | 1.00[EUR][1000 genomes] |
| rs10033598 | 1.00[EUR][1000 genomes] |
| rs1105322 | 1.00[EUR][1000 genomes] |
| rs11941251 | 1.00[EUR][1000 genomes] |
| rs11945939 | 1.00[EUR][1000 genomes] |
| rs1247657 | 0.90[EUR][1000 genomes] |
| rs1247675 | 0.90[EUR][1000 genomes] |
| rs1268486 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs1528908 | 1.00[EUR][1000 genomes] |
| rs1729700 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs1745299 | 0.90[EUR][1000 genomes] |
| rs2367156 | 1.00[EUR][1000 genomes] |
| rs2367158 | 1.00[EUR][1000 genomes] |
| rs28840157 | 1.00[EUR][1000 genomes] |
| rs41438047 | 1.00[EUR][1000 genomes] |
| rs4453908 | 1.00[EUR][1000 genomes] |
| rs56268374 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60557340 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6815239 | 1.00[EUR][1000 genomes] |
| rs6820449 | 1.00[EUR][1000 genomes] |
| rs6822028 | 1.00[EUR][1000 genomes] |
| rs6822674 | 0.95[EUR][1000 genomes] |
| rs6851809 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6852024 | 1.00[EUR][1000 genomes] |
| rs6852247 | 1.00[EUR][1000 genomes] |
| rs6852471 | 1.00[EUR][1000 genomes] |
| rs6856952 | 1.00[EUR][1000 genomes] |
| rs7670052 | 1.00[CEU][hapmap] |
| rs7690011 | 1.00[EUR][1000 genomes] |
| rs9995523 | 1.00[EUR][1000 genomes] |
| rs9995544 | 1.00[EUR][1000 genomes] |
| rs9996759 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3430875 | chr4:74243646-74420354 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001725 | chr4:74354050-74860924 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 3 | nsv530126 | chr4:74376622-74843892 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:74399600-74403400 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr4:74400000-74405400 | Strong transcription | Liver | Liver |
| 3 | chr4:74402800-74403400 | Weak transcription | GM12878-XiMat | blood |
