Variant report
| Variant | rs6816885 |
|---|---|
| Chromosome Location | chr4:125799911-125799912 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10518454 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10518455 | 0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11726687 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11729760 | 0.82[ASN][1000 genomes] |
| rs11733582 | 0.82[ASN][1000 genomes] |
| rs17181767 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17184412 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
| rs17787244 | 0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2046349 | 0.87[ASN][1000 genomes] |
| rs2086766 | 0.82[ASN][1000 genomes] |
| rs28617665 | 0.82[ASN][1000 genomes] |
| rs59349224 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62323271 | 0.82[ASN][1000 genomes] |
| rs62323272 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62323273 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62323299 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62323303 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6825198 | 0.83[ASN][1000 genomes] |
| rs7695481 | 1.00[YRI][hapmap] |
| rs7695725 | 1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879884 | chr4:125791252-125841892 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879885 | chr4:125791252-125852874 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv879886 | chr4:125791252-125856465 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125798200-125820800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
