Variant report
| Variant | rs6825198 |
|---|---|
| Chromosome Location | chr4:125801683-125801684 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125633390..125635842-chr4:125801059..125802872,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11733582 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1601118 | 0.80[EUR][1000 genomes] |
| rs1909100 | 0.80[EUR][1000 genomes] |
| rs2046349 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62323303 | 0.88[ASN][1000 genomes] |
| rs62323306 | 0.80[AMR][1000 genomes] |
| rs6813536 | 0.87[EUR][1000 genomes] |
| rs6816885 | 0.83[ASN][1000 genomes] |
| rs7356273 | 0.81[EUR][1000 genomes] |
| rs7662921 | 0.89[EUR][1000 genomes] |
| rs7695058 | 0.89[EUR][1000 genomes] |
| rs976540 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879884 | chr4:125791252-125841892 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879885 | chr4:125791252-125852874 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv879886 | chr4:125791252-125856465 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6825198 | ANKRD50 | cis | Artery Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125798200-125820800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
