The 2.0 version of rSNPBase

Variant report

Variant rs6817027
Chromosome Location chr4:54213920-54213921
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54169800-54216200 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr4:54172600-54215400 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr4:54188200-54218200 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr4:54188200-54231200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr4:54188600-54215400 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr4:54201200-54220000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr4:54201400-54215600 Weak transcription Primary T cells fromperipheralblood blood
9 chr4:54201800-54215800 Weak transcription Primary B cells from peripheral blood blood
10 chr4:54202200-54226000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr4:54206600-54220200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr4:54209200-54215400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr4:54210400-54225600 Weak transcription Small Intestine intestine
14 chr4:54211200-54216000 Weak transcription Thymus Thymus
15 chr4:54211400-54219200 Weak transcription Fetal Intestine Small intestine
16 chr4:54211600-54219600 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr4:54211600-54220200 Weak transcription Fetal Stomach stomach
18 chr4:54211800-54217800 Weak transcription Primary hematopoietic stem cells blood
19 chr4:54212000-54220600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr4:54212000-54227200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr4:54212200-54215400 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr4:54212200-54220800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr4:54212400-54217800 Weak transcription Stomach Smooth Muscle stomach
24 chr4:54212600-54214200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr4:54212600-54214200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
26 chr4:54212600-54214200 Enhancers Fetal Lung lung
27 chr4:54212600-54219200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr4:54212800-54214000 Enhancers HSMM muscle
29 chr4:54212800-54214200 Strong transcription Primary B cells from cord blood blood
30 chr4:54212800-54214200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr4:54212800-54214200 Enhancers Osteobl bone
32 chr4:54212800-54214400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr4:54212800-54214400 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr4:54212800-54214400 Strong transcription Dnd41 blood
35 chr4:54212800-54219600 Strong transcription Monocytes-CD14+_RO01746 blood
36 chr4:54213000-54214200 Enhancers Fetal Heart heart
37 chr4:54213000-54214600 Strong transcription Primary T cells from cord blood blood
38 chr4:54213200-54214000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr4:54213200-54214200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr4:54213200-54214200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr4:54213200-54214200 Enhancers Brain Substantia Nigra brain
42 chr4:54213200-54214200 Enhancers HSMMtube muscle
43 chr4:54213200-54214200 Enhancers NH-A brain
44 chr4:54213200-54214400 Enhancers HMEC breast
45 chr4:54213200-54214600 Enhancers Brain Germinal Matrix brain
46 chr4:54213200-54214800 Strong transcription GM12878-XiMat blood
47 chr4:54213200-54215400 Weak transcription K562 blood
48 chr4:54213200-54220200 Strong transcription Primary monocytes fromperipheralblood blood
49 chr4:54213400-54214000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr4:54213400-54214000 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015