Variant report

Variant	rs12504531
Chromosome Location	chr4:54276497-54276498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54275902..54277874-chr4:54281343..54283790,2	MCF-7	breast:
2	chr4:54275590..54278519-chr4:54282421..54284153,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10434434	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505040	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12506661	0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507598	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17082654	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2164265	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs2271560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2292578	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34354009	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007140	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56708336	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs56921221	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58860516	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59651495	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60831969	0.87[EUR][1000 genomes]
rs61015316	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61435460	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62323220	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323564	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62323567	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62323568	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62323569	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62323573	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62323589	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62323593	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62323595	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62323596	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62323598	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62323599	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62323601	0.85[EUR][1000 genomes]
rs62323602	0.85[EUR][1000 genomes]
rs62325162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62325166	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325214	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62325220	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62325221	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62325225	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62325227	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62325228	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62325967	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325969	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62325971	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6817027	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6820658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6826663	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6845175	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6850443	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6855607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6856301	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
4	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
5	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
6	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
7	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
8	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
10	chr4:54256600-54319200	Weak transcription	Gastric	stomach
11	chr4:54256800-54279000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:54257600-54296000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:54263800-54295000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:54264000-54279600	Weak transcription	Fetal Heart	heart
15	chr4:54264400-54294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:54266400-54293600	Weak transcription	NHEK	skin
17	chr4:54266600-54279400	Weak transcription	Brain Angular Gyrus	brain
18	chr4:54267200-54294600	Weak transcription	Hela-S3	cervix
19	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
20	chr4:54268000-54295000	Weak transcription	Fetal Brain Male	brain
21	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:54268200-54280800	Weak transcription	HUVEC	blood vessel
24	chr4:54268400-54280600	Weak transcription	HSMM	muscle
25	chr4:54268400-54319800	Weak transcription	A549	lung
26	chr4:54268600-54287400	Weak transcription	Brain Anterior Caudate	brain
27	chr4:54268800-54280800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:54268800-54292400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:54269200-54281400	Weak transcription	HepG2	liver
30	chr4:54269200-54293400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:54269400-54279400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:54269400-54294800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:54269600-54295000	Weak transcription	HMEC	breast
35	chr4:54270000-54279200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr4:54270000-54279400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:54270000-54280800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:54270000-54280800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:54270000-54280800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:54270000-54280800	Weak transcription	NHDF-Ad	bronchial
41	chr4:54270000-54284400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr4:54270000-54287200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:54270000-54292400	Weak transcription	Placenta	Placenta
44	chr4:54270000-54293400	Weak transcription	NH-A	brain
45	chr4:54270000-54294000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
47	chr4:54270200-54277000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:54270200-54277200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:54270200-54277200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:54270200-54278600	Weak transcription	GM12878-XiMat	blood

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