Variant report

Variant	rs62323569
Chromosome Location	chr4:54350279-54350280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10434434	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12233879	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12504531	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12505040	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506661	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12507598	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1435211	0.83[ASN][1000 genomes]
rs17082654	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2164265	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2271560	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2292578	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34354009	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56007140	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56708336	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56921221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58860516	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59651495	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60831969	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61015316	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61435460	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323220	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62323564	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62323567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323573	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323589	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323593	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323595	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323596	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323598	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323599	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62323601	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323602	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325162	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62325166	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62325214	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62325216	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62325219	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62325220	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62325221	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62325225	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62325227	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62325228	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62325967	0.80[EUR][1000 genomes]
rs62325969	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62325971	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6820658	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6826663	0.80[EUR][1000 genomes]
rs6845175	0.80[EUR][1000 genomes]
rs6850443	0.84[EUR][1000 genomes]
rs6855607	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856301	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54353200	Weak transcription	Gastric	stomach
2	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
7	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
8	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
9	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:54342800-54360600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
12	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
13	chr4:54343400-54352200	Weak transcription	Esophagus	oesophagus
14	chr4:54343400-54363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:54343600-54352600	Weak transcription	Placenta	Placenta
16	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:54345600-54352200	Weak transcription	Fetal Intestine Small	intestine
18	chr4:54345800-54351000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:54345800-54355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:54346000-54356400	Weak transcription	HSMMtube	muscle
21	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
22	chr4:54346600-54350600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:54347200-54351000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:54347800-54351000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:54347800-54355000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:54348000-54353400	Weak transcription	Pancreas	Pancrea
28	chr4:54348000-54355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:54348000-54362200	Weak transcription	Fetal Intestine Large	intestine
30	chr4:54348200-54359600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:54349000-54360000	Weak transcription	Liver	Liver
32	chr4:54349600-54352200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:54349800-54350400	Enhancers	HMEC	breast
34	chr4:54349800-54350400	Enhancers	Osteobl	bone
35	chr4:54349800-54351600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:54349800-54352200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:54350000-54353400	Enhancers	Ovary	ovary

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