Variant report

Variant	rs58860516
Chromosome Location	chr4:54319732-54319733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10434434	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12233879	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12504531	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12505040	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506661	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12507598	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17082654	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164265	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2271560	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2292578	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34354009	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56007140	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56708336	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56921221	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59651495	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60831969	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61015316	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61435460	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323220	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62323564	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323567	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323568	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323569	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323573	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323589	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323593	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323595	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323596	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323598	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323599	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323601	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62323602	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62325162	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62325166	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62325214	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62325216	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62325219	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325220	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325221	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62325225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62325227	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325967	0.82[EUR][1000 genomes]
rs62325969	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62325971	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6820658	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6826663	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6845175	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6850443	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6855607	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856301	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
2	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:54268400-54319800	Weak transcription	A549	lung
4	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
5	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
9	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
10	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
11	chr4:54295600-54319800	Weak transcription	Brain Anterior Caudate	brain
12	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
13	chr4:54296800-54320400	Weak transcription	Brain Germinal Matrix	brain
14	chr4:54297600-54326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:54297600-54329600	Strong transcription	Dnd41	blood
16	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr4:54302800-54320600	Weak transcription	Psoas Muscle	Psoas
18	chr4:54305000-54324600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:54311000-54319800	Weak transcription	Brain Angular Gyrus	brain
20	chr4:54311000-54320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:54311400-54320800	Weak transcription	Right Ventricle	heart
22	chr4:54311600-54319800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:54312000-54321200	Weak transcription	Small Intestine	intestine
24	chr4:54312200-54321000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr4:54312600-54321000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:54312600-54324800	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:54316000-54321600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:54316400-54329200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:54316600-54320000	Strong transcription	Fetal Intestine Small	intestine
30	chr4:54316600-54322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:54316800-54332600	Weak transcription	Esophagus	oesophagus
32	chr4:54317200-54331400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr4:54317400-54322000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:54317400-54332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr4:54317800-54320000	Strong transcription	Fetal Stomach	stomach
36	chr4:54317800-54329600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:54318000-54322200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:54318000-54322400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:54318000-54324200	Strong transcription	K562	blood
40	chr4:54318000-54324400	Strong transcription	Primary T cells from cord blood	blood
41	chr4:54318000-54329200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr4:54318000-54329600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:54318200-54321000	Strong transcription	Liver	Liver
44	chr4:54318200-54321200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:54318200-54321800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:54318200-54322000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:54318200-54323200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:54318200-54323600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:54318200-54323800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:54318200-54329200	Strong transcription	Primary T cells fromperipheralblood	blood

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